PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003485001
Common NameLOC100242494, VIT_00s0194g00200
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family FAR1
Protein Properties Length: 691aa    MW: 80194 Da    PI: 6.3548
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003485001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.91.2e-2168159190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 
                        ++Y ++A++ GFs+rk++s+ s + g ++kr+fvC+++g++  +kk t +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel
  GSVIVT01003485001  68 EYYGNFARKNGFSIRKERSRLSPQLG-VYKRDFVCYRSGFAPARKKPTGEHHRDRKSVRCGCDAKMYLSKEVvdgVSQWFVVQFSNVHNHEL 158
                        59********************8888.*******************************************99867789*************9 PP

               FAR1  90 a 90 
                         
  GSVIVT01003485001 159 L 159
                        6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1968159IPR004330FAR1 DNA binding domain
PfamPF105514.3E-22291384IPR018289MULE transposase domain
PROSITE profilePS509669.903563598IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-8567596IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-5573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MNSAASKSIW YRRQQCPCGD WKCYITHEGD VEEPSMTSQL AKYNTMSTEA MVAPYVGMVF  60
KSDEDAFEYY GNFARKNGFS IRKERSRLSP QLGVYKRDFV CYRSGFAPAR KKPTGEHHRD  120
RKSVRCGCDA KMYLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEVDQER  180
ILLLSKAGFP THRIVKVLEM EKGIQGGQLP FLERDVRNFI QNRKRVVQEN DALLSEKREN  240
DTTELLEACK ATKEADENFV YDFTVDESDK VENIAWSYGE SVHAYNVFSD VVYFDTTYRS  300
ITYGMLFGAW FGIDNHGKTV FFGCVLLQDE THRSFAWALQ TFVQFMKGRP PQAIITDLDP  360
GLRDAIRSEL PTTKHVISVW NILAKLSSWF SLPLGLQYAE FKSEFEALYC LEVPDEFDLR  420
WNQMVSRFGL SSDKHIALLF SLRASWALAF IRGYFLARMT TELYAKSVDS FLKGIFNAQT  480
CLRSFFEQVG ISSNFQNHEF EEMQYVHSKT CIPIEENARS TLTPFAFRAL QHELVLAMQY  540
AASEMSTGSY IVRHFSKMEG ERLVIWIPEE EQIHCSCKEF EFSGILCRHA LRILVMKNYF  600
QLPEKYFPSR WRRESTLIPY DDRNTQNGDD EWFQEFHSLT ATLFNESSMT KERSDHVRRE  660
LTKEITRLLN EVRGMPPSEE VMDSTLSPTS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4461220.0AM446122.2 Vitis vinifera contig VV78X181633.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010646262.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLD7T5G30.0D7T5G3_VITVI; Uncharacterized protein
STRINGVIT_00s0194g00200.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]