PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01003209001
Common NameLOC100265410, VIT_00s0181g00230
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family LSD
Protein Properties Length: 142aa    MW: 15368.3 Da    PI: 7.6993
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01003209001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD135.51.7e-115175125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       Cg+Cr lLsYP G ++V C++C+tV
  GSVIVT01003209001 51 CGSCRRLLSYPQGTRHVECSCCQTV 75
                       ************************9 PP
2zf-LSD145.51.2e-1489113125
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                        Cg+C +lL+YP+GApsVRC++C +V
  GSVIVT01003209001  89 CGSCAVLLMYPYGAPSVRCSSCRFV 113
                        **********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.2E-164878IPR005735Zinc finger, LSD1-type
PfamPF069434.0E-105175IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.5E-1186114IPR005735Zinc finger, LSD1-type
PfamPF069432.9E-1289113IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
METEAETTGS RQEGLSPNHS AGNGKDARRD GETVAPTTTL KQPSEMAQMV CGSCRRLLSY  60
PQGTRHVECS CCQTVNFVLE AHQVGQVKCG SCAVLLMYPY GAPSVRCSSC RFVTEIGVHN  120
RRLPLSVQQG HQLPLHSYTD N*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3946600.0FQ394660.1 Vitis vinifera clone SS0AFA1YI11.
GenBankFQ3973800.0FQ397380.1 Vitis vinifera clone SS0AEB7YA03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273964.11e-101PREDICTED: protein LOL2
SwissprotO654266e-40LOL2_ARATH; Protein LOL2
TrEMBLE0CVZ11e-100E0CVZ1_VITVI; Uncharacterized protein
STRINGVIT_00s0181g00230.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-42lsd one like 2