PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSVIVT01001701001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24739.1 Da PI: 6.6784 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.1 | 7.4e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n+ rqvtfskRr g++KKA ELS+LCdae+ +i+fs gkl+eyss GSVIVT01001701001 9 KKIDNTAARQVTFSKRRRGLFKKALELSTLCDAEIELIVFSAAGKLFEYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 45.1 | 4.4e-16 | 89 | 170 | 17 | 98 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ a L kei + + +R++ Ge+L+ L+++eL +Le+ Le +l ++ + K e + ++i++lq+k + l+ en++Lrk + GSVIVT01001701001 89 ENRTCAALSKEIAQQTQRLRQMRGEELQGLKIEELIELEKLLEAGLCSVVEEKAERIQTEISDLQRKGDLLRGENERLRKWM 170 5667788999999999999***********************************************************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.7E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.511 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.40E-37 | 3 | 73 | No hit | No description |
PRINTS | PR00404 | 9.2E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.35E-29 | 3 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.7E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.77 | 86 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 8.0E-14 | 91 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MPRQKIQIKK IDNTAARQVT FSKRRRGLFK KALELSTLCD AEIELIVFSA AGKLFEYSSS 60 SVNQVIERHS QHPQTPEKPE PPSLELQLEN RTCAALSKEI AQQTQRLRQM RGEELQGLKI 120 EELIELEKLL EAGLCSVVEE KAERIQTEIS DLQRKGDLLR GENERLRKWM ENISEAQPLL 180 QQGHSSESIT NNICSLSDPN QGHHNSDTSL KLGLPFSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
5f28_C | 6e-20 | 1 | 77 | 1 | 77 | MEF2C |
5f28_D | 6e-20 | 1 | 77 | 1 | 77 | MEF2C |
6byy_A | 5e-20 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6byy_B | 5e-20 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6byy_C | 5e-20 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6byy_D | 5e-20 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6bz1_A | 6e-20 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6bz1_B | 6e-20 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6bz1_C | 6e-20 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6bz1_D | 6e-20 | 1 | 77 | 1 | 77 | MEF2 CHIMERA |
6c9l_A | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-20 | 1 | 77 | 1 | 77 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Vvi.14707 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During vegetative phase expressed in young leaves and apical meristem until early stage of bolting. Early in development of the inflorescence present in the coflorescence and flower primordia but not in the main apical meristem. Present throughout the floral meristem during early stages of flower development. Later disappears prior to emergence of sepal primordia. {ECO:0000269|PubMed:19656343}. | |||||
Uniprot | TISSUE SPECIFICITY: Detected in roots and leaves. Expressed at very low levels in flowers and siliques. Present in floral meristems. {ECO:0000269|PubMed:19656343}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM489226 | 4e-94 | AM489226.2 Vitis vinifera contig VV78X193224.8, whole genome shotgun sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010648095.1 | 1e-158 | PREDICTED: MADS-box protein JOINTLESS isoform X2 | ||||
Refseq | XP_010648096.1 | 1e-158 | PREDICTED: MADS-box protein JOINTLESS isoform X2 | ||||
Swissprot | Q9FVC1 | 3e-74 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A3G2BC07 | 1e-156 | A0A3G2BC07_VITVI; Agamous-like MADS-box protein 24 | ||||
STRING | VIT_03s0167g00070.t01 | 1e-107 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 9e-62 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GSVIVT01001701001 |