PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01000717001
Common NameLOC100247732, VIT_07s0141g00220
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family bHLH
Protein Properties Length: 290aa    MW: 31102.3 Da    PI: 6.3746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01000717001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-10138182554
                        HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  GSVIVT01000717001 138 HSIAERLRRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 182
                        99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-15131192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.12133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-15135192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7138182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.5E-11139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MASNPSEAPA DDFLEQILGI PTYPAADPNL AANDVNLAAP MVLQLGSGEG SGHIAGGYQG  60
TMFPLGLRLE QGKSSFLKPE DASGSGKRFR EEVIDGRAST VKNAFHGQPM QATVAAAPHP  120
PAIRPRVRAR RGQATDPHSI AERLRRERIA ERIRALQELV PSVNKTDRAA MLDEIVDYVK  180
FLRLQVKVLS MSRLGGAGAV APLVTDIPLA SVEEEASEGG RNEPAWEKWS NDGTERQVAK  240
LMEENVGAAM QFLQSKALCI MPISLASAIY HSQQPDTTPL IKPQTNPPS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142147RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.64230.0bud| fruit| inflorescence| leaf| pedicel
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3924390.0FQ392439.1 Vitis vinifera clone SS0AFA5YK13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002281626.10.0PREDICTED: transcription factor UNE12
SwissprotO227681e-130UNE12_ARATH; Transcription factor UNE12
TrEMBLD7SQJ70.0D7SQJ7_VITVI; Uncharacterized protein
STRINGVIT_07s0141g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.21e-108bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]