PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vun011756 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 127aa MW: 14864.2 Da PI: 10.4268 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 108.5 | 8e-34 | 4 | 127 | 3 | 121 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvka....eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +G+ F+Ptdeelv++yLk+++ g++ ++ +v++++d+++vePw+ p + k + +++ew fFs+ + ++++kr r tksg+Wk tgkd++v s+ Vun011756 4 VGMGFRPTDEELVDFYLKHRLLGDDPRV-RVMTDIDLCDVEPWEVPvMlaK--SvipfKDREWCFFSPVKLMSSNSKRFIRRTKSGFWKPTGKDRDVRSR 100 79***********************999.99***************43441..25566999**************************************9 PP NAM 96 .kgelvglkktLvfykgrapkgektdW 121 +++++g+kktLvf gra+k++++dW Vun011756 101 dTNTVIGTKKTLVFKYGRASKSVNSDW 127 666779********************* PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 35.585 | 2 | 127 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-16 | 4 | 127 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-35 | 4 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 127 aa Download sequence Send to blast |
MRIVGMGFRP TDEELVDFYL KHRLLGDDPR VRVMTDIDLC DVEPWEVPVM LAKSVIPFKD 60 REWCFFSPVK LMSSNSKRFI RRTKSGFWKP TGKDRDVRSR DTNTVIGTKK TLVFKYGRAS 120 KSVNSDW |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-20 | 5 | 127 | 18 | 133 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027907828.1 | 9e-88 | NAC domain-containing protein 62-like isoform X1 | ||||
Refseq | XP_027907829.1 | 9e-88 | NAC domain-containing protein 62-like isoform X1 | ||||
Refseq | XP_027907832.1 | 5e-88 | NAC domain-containing protein 62-like isoform X4 | ||||
TrEMBL | A0A1S3VT64 | 2e-65 | A0A1S3VT64_VIGRR; NAC domain-containing protein 40 | ||||
STRING | XP_007135335.1 | 4e-60 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G17260.1 | 2e-33 | NAC domain containing protein 86 |