PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun011208
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 158aa    MW: 18211.1 Da    PI: 9.7567
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-167a-Vigna_unguiculata-23430PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF435.7e-141150342
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
               i++ + r+ t+ kR++gi+KK +EL +LC++ ++ ii s+
  Vun011208 11 ISDLTARKSTYKKRKKGIIKKVSELTILCGISACAIISSP 50
               89999********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.586149IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-21182IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-7323IPR002100Transcription factor, MADS-box
PfamPF003192.7E-131150IPR002100Transcription factor, MADS-box
PRINTSPR004046.8E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MTRQKVKLAY ISDLTARKST YKKRKKGIIK KVSELTILCG ISACAIISSP FEAKAEIWPD  60
PEGAKKVIEK YLDASVIDES KNVNQESFLM QRIGRAQEQL KKLRQENEEK EKILSIFRYM  120
QGEDLPTDIQ ELKQLKNLIQ NTMKETKNKM DDLNSESV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027935348.11e-112agamous-like MADS-box protein AGL80
TrEMBLA0A4D6N2N51e-110A0A4D6N2N5_VIGUN; MADS-box transcription factor
STRINGXP_007145049.16e-88(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.11e-33M-type_MADS family protein