PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun011002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 168aa MW: 19169.3 Da PI: 4.9632 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 45.5 | 1.3e-14 | 86 | 132 | 3 | 49 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFq 49 k++++t+eq++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFq Vun011002 86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQ 132 56689*****************************************9 PP | |||||||
2 | HD-ZIP_I/II | 88.5 | 8.1e-29 | 86 | 166 | 2 | 83 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFq +++ kdy +Lk++yd+lk + e+L ++ Vun011002 86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQTE-GKVQDEAARKDYGTLKASYDRLKGDYESLFRD 166 9**********************************************86.799999*******************9999775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.63E-14 | 76 | 132 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.989 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-8 | 83 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.09E-12 | 84 | 132 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-14 | 84 | 132 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.8E-12 | 86 | 132 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MAGGKLHAAS TMSLLLQNER LPCSSEVLES LWAHTSNPAS FQGSKSMVDF ENVSGGRVTD 60 RPFFQALEKE ENCDDDYEGC FHQPGKKRRL TSEQVQFLER NFEVENKLEP ERKVQLAKEL 120 GLQPRQVAIW FQTEGKVQDE AARKDYGTLK ASYDRLKGDY ESLFRDDS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014521387.2 | 1e-108 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A1S3VT75 | 1e-106 | A0A1S3VT75_VIGRR; LOW QUALITY PROTEIN: homeobox-leucine zipper protein HAT5 | ||||
STRING | XP_007157405.1 | 1e-102 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 1e-30 | homeobox 1 |