PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun009583

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

AP2

Protein Properties

Length: 225aa MW: 24519.9 Da PI: 8.2045

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-26697	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48	3.2e-15	150	209	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g Vun009583 150 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 209 57*****************666664477446******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.18E-17	150	219	IPR016177	DNA-binding domain
CDD	cd00018	5.98E-22	150	219	No hit	No description
Pfam	PF00847	2.4E-12	150	209	IPR001471	AP2/ERF domain
SMART	SM00380	6.1E-29	151	223	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.927	151	217	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.4E-16	151	218	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-5	152	163	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.9E-5	199	219	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDSSSSPPNN NNSLAFSLSN HFPNPSSSHS TSPLSLFHSF TSYPSLTLTG NSTVDAPPEA 60 AGRGGATNLS IFTAAPKFED FLGGSATADT TATAAPPQLP QFSTDNNLYE SELKTTIAAC 120 FPRGFAAETS TEPQKPSPKK TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR 180 KGRQVYLGGY DKEDKAARAY DLAALKYWGP TTTTNFPISN YEKEL

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269\|PubMed:15988559}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027921122.1	1e-163	AP2-like ethylene-responsive transcription factor AIL5
Swissprot	Q6PQQ3	7e-65	AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBL	A0A4D6KWI8	1e-162	A0A4D6KWI8_VIGUN; AP2-like factor
STRING	XP_007154750.1	1e-139	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	7e-64	AINTEGUMENTA-like 5

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Molitor AM,Bu Z,Yu Y,Shen WH Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes. PLoS Genet., 2014. 10(1): p. e1004091 [PMID:24465219] Feng J,Chen D,Berr A,Shen WH ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Plant Physiol., 2016. 172(3): p. 1746-1759 [PMID:27630184] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]