PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun009374

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 232aa MW: 26743.3 Da PI: 9.9677

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-167a-Vigna_unguiculata-11782	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.6	3.5e-51	14	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelv++yLk+kv + +l++ +vi+e+d++k++PwdLp eke yfFs+++ ky++g+r+nrat+sgyWkatg dk++l++ ++++ Vun009374 14 LPPGFRFHPTDEELVMQYLKRKVFSCPLPA-SVIPEFDVCKSDPWDLPGD---LEKERYFFSTKEPKYPNGNRSNRATSSGYWKATGLDKQILTSkGNQV 109 79**************************.99***********54...46899******************************99857778 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfy+g+ p+g++tdW+mheyrl Vun009374 110 VGMKKTLVFYRGKPPHGSRTDWIMHEYRL 138 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-61	10	158	IPR003441	NAC domain
PROSITE profile	PS51005	58.324	14	158	IPR003441	NAC domain
Pfam	PF02365	2.2E-27	15	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEKLNFLKNG ELRLPPGFRF HPTDEELVMQ YLKRKVFSCP LPASVIPEFD VCKSDPWDLP 60 GDLEKERYFF STKEPKYPNG NRSNRATSSG YWKATGLDKQ ILTSKGNQVV GMKKTLVFYR 120 GKPPHGSRTD WIMHEYRLLN SPSQAPMENW VLCRIFLKRR SGGRNGEEKE MESLRGGVEN 180 RKVRKSKMVF YNFLAQRKTD SSSSAGSGIT HESDEHEESS SSDTFPYFRT KP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-51	11	162	14	169	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-51	11	162	14	169	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-51	11	162	14	169	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-51	11	162	14	169	NO APICAL MERISTEM PROTEIN
3swm_A	6e-51	11	162	17	172	NAC domain-containing protein 19
3swm_B	6e-51	11	162	17	172	NAC domain-containing protein 19
3swm_C	6e-51	11	162	17	172	NAC domain-containing protein 19
3swm_D	6e-51	11	162	17	172	NAC domain-containing protein 19
3swp_A	6e-51	11	162	17	172	NAC domain-containing protein 19
3swp_B	6e-51	11	162	17	172	NAC domain-containing protein 19
3swp_C	6e-51	11	162	17	172	NAC domain-containing protein 19
3swp_D	6e-51	11	162	17	172	NAC domain-containing protein 19
4dul_A	5e-51	11	162	14	169	NAC domain-containing protein 19
4dul_B	5e-51	11	162	14	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027930186.1	1e-173	NAC domain-containing protein 83-like
Swissprot	Q9FY93	2e-97	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1S3TRL2	1e-149	A0A1S3TRL2_VIGRR; NAC domain-containing protein 83-like
STRING	XP_007139098.1	1e-141	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	3e-98	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]