PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vun008800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | B3 | ||||||||
Protein Properties | Length: 253aa MW: 28932.3 Da PI: 8.5664 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.3 | 6.4e-14 | 2 | 79 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +pk+f+++ +++ s + +s ++Wev + kk++++++++GW +Fv +n L + ++F+++g+++f +v++f + Vun008800 2 KVPKEFLKNL-NEELLSNAVLSIPSSDEKWEVSV--VKKGSEVYMQNGWPQFVTDNSLVLHELLLFEYHGDNCF--HVQIFGT 79 689***9544.4455665666666788*******..999999********************************..**99976 PP | |||||||
2 | B3 | 66.6 | 3.5e-21 | 151 | 248 | 2 | 99 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 + v+t+ +v +++l + kfa+++ +ee k++ + +++g W+v+++y + +s++ l++GW +Fv++n+L gD+++F+l+++++ +++v++fr+ Vun008800 151 KHVMTKCHVEGRCILPIASKFARKYI--PEEVKQIHMGNSEGTLWKVQVSYfKIQSRSyANLSTGWAKFVRDNKLMRGDTCIFELEENKDLHMKVHIFRT 248 67899999*****************4..334557****************9866666667799***********************99**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 3.15E-10 | 1 | 77 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.1E-17 | 1 | 80 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.747 | 1 | 80 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.2E-15 | 1 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 5.2E-5 | 1 | 80 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.2E-11 | 2 | 78 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.8E-23 | 142 | 249 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-21 | 147 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.493 | 150 | 249 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.7E-10 | 150 | 249 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-18 | 152 | 248 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.88E-19 | 153 | 247 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MKVPKEFLKN LNEELLSNAV LSIPSSDEKW EVSVVKKGSE VYMQNGWPQF VTDNSLVLHE 60 LLLFEYHGDN CFHVQIFGTN GLERLCVKET TQEQPTTIPK KTIPTSAGSS LHKSKSCKKD 120 LSQPKESPIE IESSEALKLA ESFTSCKPHW KHVMTKCHVE GRCILPIASK FARKYIPEEV 180 KQIHMGNSEG TLWKVQVSYF KIQSRSYANL STGWAKFVRD NKLMRGDTCI FELEENKDLH 240 MKVHIFRTRC APS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027909046.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
Refseq | XP_027909047.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
Refseq | XP_027909048.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
Refseq | XP_027909049.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A4D6LII4 | 1e-171 | A0A4D6LII4_VIGUN; Uncharacterized protein | ||||
STRING | XP_007131907.1 | 1e-115 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-12 | B3 family protein |