PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun005788 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||||||
Protein Properties | Length: 173aa MW: 20081.2 Da PI: 6.0211 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.7 | 9.8e-32 | 2 | 111 | 11 | 128 |
NAM 11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy 109 deelvv++L++k++ +++ +vi+++++y+++Pw+L+ ++ ae ++wy++s+r +nr+t +gyWk tg +++v+s+ +++ vg+kk +vf+ Vun005788 2 DEELVVHFLHRKASLLPCHP-DVIPDLELYQYDPWQLHGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEEPVVSSsNNKRVGMKKYFVFH 92 9****************999.99**************977778899******984........58******************9877888********** PP NAM 110 kgrapkgektdWvmheyrl 128 g+a g kt+W+m+eyrl Vun005788 93 VGEAAAGIKTNWIMQEYRL 111 *****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 39.51 | 1 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-16 | 2 | 111 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.62E-41 | 2 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
XDEELVVHFL HRKASLLPCH PDVIPDLELY QYDPWQLHGR ALAEGNQWYY YSRRTQNRVT 60 GNGYWKPTGM EEPVVSSSNN KRVGMKKYFV FHVGEAAAGI KTNWIMQEYR LSDSASSTRS 120 SKRKPQPKAD YKKWVICRVY ERNGEEDNGT ELSCLDEVFL SLDDDLDEIS LPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-32 | 2 | 143 | 30 | 169 | NAC domain-containing protein 19 |
3swm_B | 2e-32 | 2 | 143 | 30 | 169 | NAC domain-containing protein 19 |
3swm_C | 2e-32 | 2 | 143 | 30 | 169 | NAC domain-containing protein 19 |
3swm_D | 2e-32 | 2 | 143 | 30 | 169 | NAC domain-containing protein 19 |
3swp_A | 2e-32 | 2 | 143 | 30 | 169 | NAC domain-containing protein 19 |
3swp_B | 2e-32 | 2 | 143 | 30 | 169 | NAC domain-containing protein 19 |
3swp_C | 2e-32 | 2 | 143 | 30 | 169 | NAC domain-containing protein 19 |
3swp_D | 2e-32 | 2 | 143 | 30 | 169 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027931410.1 | 1e-128 | NAC domain-containing protein 104-like | ||||
Swissprot | Q8GWK6 | 8e-76 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A4D6KJJ3 | 1e-126 | A0A4D6KJJ3_VIGUN; Uncharacterized protein | ||||
STRING | XP_007148437.1 | 1e-113 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-69 | xylem NAC domain 1 |
Publications ? help Back to Top | |||
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