PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun005710
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 176aa    MW: 18495.9 Da    PI: 6.7737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45853727PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-3703PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.1e-072371555
               HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               r+ +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Vun005710  2 RLAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 37
               6788999********8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.078136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.87E-8141No hitNo description
SMARTSM003533.5E-4142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-11246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-12346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
ERLAERMKAL QELVPNANKT DKASMLDEII DYVKFLQLQV KVLSMSRLGG AAAVAPLVAD  60
ISSEGGADCV QQKRNNTNGN SNGNHGSSND TLTTTEQQVA KLMEEDMGSA MQYLQGKGLC  120
LMPISLATAI SKATCHTRNP FANGDGPSSP GISALTLHSS TLSNGLVKDT ASVSKS
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027916755.11e-124transcription factor bHLH66-like
SwissprotQ9ZUG92e-68BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A4D6KUV21e-122A0A4D6KUV2_VIGUN; Phytochrome-interacting factor 3
STRINGXP_007154897.11e-108(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.16e-62LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]