PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun005544 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 182aa MW: 20784.1 Da PI: 7.5098 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 84 | 137 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq++ Le+ F +++++ e++ +LAk+lgL+ rqV +WFqNrRa++k Vun005544 84 KKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWK 137 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 113.8 | 1e-36 | 83 | 165 | 1 | 84 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 ekkrrls eqv++LE+sF+ee+kLeperK +la+eLglqprqva+WFqnrRAR+ktk++Ekdy++L++a+ ++++ + L +e+ Vun005544 83 EKKRRLSVEQVQFLEKSFDEENKLEPERKIRLAKELGLQPRQVAIWFQNRRARWKTKRMEKDYDSLQHAIM-ISSQFDDLLREK 165 69****************************************************************99875.455555554443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-20 | 70 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.572 | 79 | 139 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-19 | 82 | 143 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.21E-17 | 84 | 140 | No hit | No description |
Pfam | PF00046 | 5.5E-17 | 84 | 137 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-20 | 86 | 147 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 7.8E-6 | 110 | 119 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 114 | 137 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 7.8E-6 | 119 | 135 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MVAGTVFSAA SNLTTLLPNQ TPPSASQPLD SLFHSSSSSP FLGSRSIVSF GDVQGGKGCN 60 GSFFLPYDEN GDEDTDEYFH QPEKKRRLSV EQVQFLEKSF DEENKLEPER KIRLAKELGL 120 QPRQVAIWFQ NRRARWKTKR MEKDYDSLQH AIMISSQFDD LLREKISSKL STKLSEKCLE 180 RX |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017419795.1 | 1e-101 | PREDICTED: homeobox-leucine zipper protein ATHB-16-like | ||||
Swissprot | Q8LC03 | 7e-33 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A4D6NJA6 | 1e-106 | A0A4D6NJA6_VIGUN; Homeobox-leucine zipper protein | ||||
STRING | XP_007138213.1 | 5e-91 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 2e-34 | homeobox 1 |
Publications ? help Back to Top | |||
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