PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun005524

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

YABBY

Protein Properties

Length: 183aa MW: 20482.2 Da PI: 7.8815

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45831707	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-34214	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.7	7.3e-67	6	160	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 ++e+vCyv+CnfCntilavsvP++sl+++vtvrCGhC++llsvn+ + q + ++ +s k++l ee + k+ +++++ ++ + e Vun005524 6 MATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDP--QSQKPHLSF----EEPSSKELGSSSSKCNKIAPF----ET 95 689*****************************************999999999886..555565543....344444444433333333343....34 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e pr+pp irP ekr rvPsaynrfikeeiqrikasnPdishreafs aaknWahfP+ihfgl Vun005524 96 VEHEQPRIPP-IRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGL 160 5678899999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.9E-72	7	160	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-7	105	153	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-4	113	154	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MSMEMMATER VCYVHCNFCN TILAVSVPYS SLLTIVTVRC GHCANLLSVN MGASLQPFPP 60 QDPQSQKPHL SFEEPSSKEL GSSSSKCNKI APFETVEHEQ PRIPPIRPTE KRHRVPSAYN 120 RFIKEEIQRI KASNPDISHR EAFSSAAKNW AHFPHIHFGL KLDGNSEGKL EQGEGGEKTN 180 GFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027909697.1	1e-136	putative axial regulator YABBY 2 isoform X4
Swissprot	Q9XFB0	4e-80	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A0S3SC14	1e-124	A0A0S3SC14_PHAAN; Uncharacterized protein
STRING	XP_007132510.1	1e-120	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	6e-72	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]