PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun005455 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | YABBY | ||||||||||||
Protein Properties | Length: 186aa MW: 20813.7 Da PI: 8.7699 | ||||||||||||
Description | YABBY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 232.3 | 1.1e-71 | 6 | 163 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsen 104 ++e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+ + q ++++ ++l k ++++l++++ +++ +s + ++ e+ Vun005455 6 MATERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQPFPSQET------QHLSTVAKLQRQHLSVQEACSKELGSSSKCKS-FES 98 579**********************************************999999996......34444444444444444444433333333333.356 PP YABBY 105 edeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Vun005455 99 VEHEQPRIPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 163 6788899999.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.6E-73 | 7 | 163 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.7E-8 | 106 | 156 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.9E-5 | 111 | 157 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSMDMMATER VCYVHCNFCN TTLAVSVPCS SLLTIVTVRC GHCANLLSVN MGASLQPFPS 60 QETQHLSTVA KLQRQHLSVQ EACSKELGSS SKCKSFESVE HEQPRIPPIR PPEKRQRVPS 120 AYNRFIKEEI QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKLDGNKQ GKLDQGDATQ 180 KSNGFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027926993.1 | 1e-139 | putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 2e-80 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A0S3SH30 | 1e-136 | A0A0S3SH30_PHAAN; Uncharacterized protein | ||||
STRING | XP_007150001.1 | 1e-123 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 5e-74 | YABBY family protein |
Publications ? help Back to Top | |||
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