PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun005402

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 187aa MW: 21476.9 Da PI: 9.9471

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45802786	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-11783	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.4	5.7e-36	3	93	36	128
NAM 36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 e+d++k++PwdLp eke yfFs+++ ky++g+r+nrat+sgyWkatg dk++l++ ++++vg+kktLvfy+g+ p+g++tdW+mheyrl Vun005402 3 EFDVCKSDPWDLPGD---LEKERYFFSTKEPKYPNGNRSNRATSSGYWKATGLDKQILTSkGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRL 93 78*********54...46899******************************99857778*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.605	1	113	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-42	2	113	IPR003441	NAC domain
Pfam	PF02365	4.0E-15	10	93	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
XPEFDVCKSD PWDLPGDLEK ERYFFSTKEP KYPNGNRSNR ATSSGYWKAT GLDKQILTSK 60 GNQVVGMKKT LVFYRGKPPH GSRTDWIMHE YRLLNSPSQA PMENWVLCRI FLKRRSGGRN 120 GEEKEMESLR GKVDSRKVRK LKMVFYDFLA QSKTDCSSSA GSGITHESDE NEESSSSNTF 180 PYVRRKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-35	3	117	54	172	NAC domain-containing protein 19
3swm_B	1e-35	3	117	54	172	NAC domain-containing protein 19
3swm_C	1e-35	3	117	54	172	NAC domain-containing protein 19
3swm_D	1e-35	3	117	54	172	NAC domain-containing protein 19
3swp_A	1e-35	3	117	54	172	NAC domain-containing protein 19
3swp_B	1e-35	3	117	54	172	NAC domain-containing protein 19
3swp_C	1e-35	3	117	54	172	NAC domain-containing protein 19
3swp_D	1e-35	3	117	54	172	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027928673.1	1e-137	NAC domain-containing protein 83-like
Swissprot	Q9FY93	8e-70	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A4D6NH42	1e-123	A0A4D6NH42_VIGUN; Uncharacterized protein
STRING	XP_007139098.1	1e-109	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	7e-70	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]