PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun004525 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||||||
Protein Properties | Length: 220aa MW: 24934.9 Da PI: 8.676 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.4 | 1e-51 | 14 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrF Ptdeel+v+yL++kv+ ++ +i+evd+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++v Vun004525 14 LPPGFRFYPTDEELLVQYLCRKVAXAPFFSLPIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVITT-EGRKV 112 79*************************888799***************8777899*************************************99.999** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkg+kt+W+mheyr+ Vun004525 113 GIKKALVFYVGKAPKGSKTNWIMHEYRV 140 **************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-63 | 10 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.783 | 14 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-26 | 15 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MGVPERDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAXAP FFSLPIIAEV DLYKFDPWVL 60 PAKAVFGEKE WYFFSPRDRK YPNGSRPNRV AGSGYWKATG TDKVITTEGR KVGIKKALVF 120 YVGKAPKGSK TNWIMHEYRV LDSSRKNNLG TTKLDDWVLC RIYKKNSSSQ KVEANLWAKE 180 CSNGSSPSSS SHVEDMVESF LEIDDQCFNF SGCGLDQINX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-103 | 1 | 171 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-103 | 1 | 171 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-103 | 1 | 171 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-103 | 1 | 171 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-103 | 1 | 171 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-103 | 1 | 171 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027908969.1 | 1e-142 | NAC domain-containing protein 72-like | ||||
Swissprot | A0A3Q7HH64 | 1e-107 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A4D6LF17 | 1e-141 | A0A4D6LF17_VIGUN; Uncharacterized protein | ||||
STRING | XP_007133057.1 | 1e-132 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 1e-106 | NAC domain containing protein 3 |
Publications ? help Back to Top | |||
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