PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun004459 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | WRKY | ||||||||||||
Protein Properties | Length: 222aa MW: 24433.3 Da PI: 9.6042 | ||||||||||||
Description | WRKY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.3 | 3.2e-33 | 11 | 69 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+ Vun004459 11 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 69 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-35 | 2 | 71 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-29 | 3 | 71 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.32 | 6 | 71 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 11 | 70 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-25 | 12 | 69 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
XVQTTSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTNA GCTVRKHVER ASHDLKSVIT 60 TYEGKHNHDV PAARASSHVN ANASNANQAS GVLHSHVHRP EPSQVHNGMG RLERPSLGSF 120 NLPGRQQLAH SHGFSFGMNQ PMLSNLAMSG LGHMQAKLPV MPVHPFLAQQ QQQNPSNDYG 180 FMMPKGEPNV EAIPEHVGGL NLPNGSSVYQ EIMSRMPLGP HM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-39 | 2 | 72 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 1e-39 | 2 | 72 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027925372.1 | 1e-151 | probable WRKY transcription factor 2 | ||||
Refseq | XP_027925381.1 | 1e-151 | probable WRKY transcription factor 2 | ||||
Refseq | XP_027925388.1 | 1e-151 | probable WRKY transcription factor 2 | ||||
Refseq | XP_027925397.1 | 1e-151 | probable WRKY transcription factor 2 | ||||
Swissprot | Q9FG77 | 1e-56 | WRKY2_ARATH; Probable WRKY transcription factor 2 | ||||
TrEMBL | A0A4D6M2I7 | 1e-149 | A0A4D6M2I7_VIGUN; WRKY transcription factor 33 | ||||
STRING | XP_007148682.1 | 1e-131 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 5e-55 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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