PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun003284
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family LBD
Protein Properties Length: 264aa    MW: 28588.6 Da    PI: 9.3661
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45804883PU_refUnigeneView CDS
PUT-167a-Vigna_unguiculata-14623PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.41.8e-41691681100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+Ca++C+++pyf  ++p+kf +vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq+++l+ael+++++e
  Vun003284  69 PCAACKLLRRRCAEECPFSPYFSPHEPQKFVAVHKVFGASNVSKMLLEVPEAQRADAANSLVYEANLRLRDPVYGCMGAISTLQQQVQSLQAELNAIRAE 168
                7**********************************************************************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.49268169IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-4169166IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
GVPVYETKIF LPPNPPLRSR KSKGMFGHQE IDRLEEITKV RAEVEASSQM GRKHFYGPTP  60
GITLNTVTPC AACKLLRRRC AEECPFSPYF SPHEPQKFVA VHKVFGASNV SKMLLEVPEA  120
QRADAANSLV YEANLRLRDP VYGCMGAIST LQQQVQSLQA ELNAIRAEIL KYKYREAASL  180
ISSNHAALVS SADAISAAIP TNSQPLGLSQ PLTPPPPKLL HTPPLKPLPS PSVILSSFSS  240
SSTSSVYTPP KSSMSLGSIS STEX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-436918011122LOB family transfactor Ramosa2.1
5ly0_B1e-436918011122LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027939574.11e-171LOB domain-containing protein 13 isoform X1
SwissprotQ9AT612e-72LBD13_ARATH; LOB domain-containing protein 13
TrEMBLA0A4D6MI021e-163A0A4D6MI02_VIGUN; Carbamoyl-phosphate synthase large subunit
STRINGXP_007142059.11e-128(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.13e-74LOB domain-containing protein 13
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]