PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Vun003235 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | DBB | ||||||||||||
Protein Properties | Length: 266aa MW: 29428.9 Da PI: 6.8834 | ||||||||||||
Description | DBB family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22 | 3.4e-07 | 4 | 43 | 5 | 38 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++ ++ fC+ ++ lC+ C +H+ H+ Vun003235 4 QCDVCNKHDASVFCTADEAVLCDGCDHRIHHAnklaskHQ 43 7****************************74446777776 PP | |||||||
2 | zf-B_box | 25.2 | 3.4e-08 | 52 | 91 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 + + C+ ++e ++ fC++++ lC++C +++H+ Ht+ Vun003235 52 QHPLCDVCQERRAFTFCQQDRAILCRECDVSIHSAneHTL 91 5689*****************************6688987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.509 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.47E-5 | 3 | 47 | No hit | No description |
SMART | SM00336 | 9.0E-6 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 9.0E-12 | 51 | 98 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.239 | 51 | 98 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.6E-6 | 52 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.19E-9 | 54 | 98 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MKIQCDVCNK HDASVFCTAD EAVLCDGCDH RIHHANKLAS KHQRFSLLRP KQHPLCDVCQ 60 ERRAFTFCQQ DRAILCRECD VSIHSANEHT LKHDRFLLTG VKLSASSSSQ ETPSPSNSAP 120 DSLFHVSNQK TIPLSSTVSK VGVEAMGSAS ASSISEYLIE TLPGWQVEDF LDSYSVAFGF 180 SKSDEALPRF DGDMESHLGS FSTENVGIWV PQAPPPLLSS SQMNRVIGQN ETNNIKGSSR 240 SRLKDDNFTV PQISPQSNSK RGRFLW |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027938811.1 | 0.0 | B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 9e-77 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A4D6MBL4 | 0.0 | A0A4D6MBL4_VIGUN; Zinc finger protein CONSTANS | ||||
STRING | XP_007160700.1 | 1e-161 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 8e-74 | salt tolerance homolog2 |