PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun002773
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 287aa    MW: 33265.8 Da    PI: 9.4833
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45800203PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-36PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.34.2e-1954101148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd llv++v+++G g+W++++r  g++R +k+c++rw +yl
        Vun002773  54 KGPWTAEEDRLLVEYVRLHGEGRWNSVSRLAGLKRNGKSCRLRWVNYL 101
                      79********************************************97 PP
2Myb_DNA-binding52.51.1e-16107151147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T++E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
        Vun002773 107 RGQITPQEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 151
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.20549101IPR017930Myb domain
SMARTSM007171.6E-1653103IPR001005SANT/Myb domain
SuperFamilySSF466897.11E-3053148IPR009057Homeodomain-like
PfamPF002492.4E-1754101IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2355108IPR009057Homeodomain-like
CDDcd001671.08E-1156101No hitNo description
PROSITE profilePS5129424.928102156IPR017930Myb domain
SMARTSM007175.8E-15106154IPR001005SANT/Myb domain
PfamPF002491.7E-14107151IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-24109155IPR009057Homeodomain-like
CDDcd001673.25E-10111152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
XGHASNISPN SVSQKLQEKE TIFLQEQTWN PNCMYWGKVL GGGGVMMEEE LWRKGPWTAE  60
EDRLLVEYVR LHGEGRWNSV SRLAGLKRNG KSCRLRWVNY LRPDLKRGQI TPQEESIILE  120
LHARWGNRWS TIARSLPGRT DNEIKNYWRT HFKKKAKSPS DAAEKARNRV MKKQQFQQQQ  180
QLQQQQQQYE AQKQLQFNFD MKDIMALLED NNTCRTPYAA ASQSRQEMNT MHQNNTEEQG  240
FFYSMLNNGN ISAPETSSEN LLDGLWNLDH GNFTVANAAS KAGLYNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-265415627128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027935634.10.0transcription factor MYB108-like isoform X1
TrEMBLA0A4D6MWI31e-167A0A4D6MWI3_VIGUN; Myb proto-oncogene protein
STRINGXP_007145351.11e-142(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.19e-80myb domain protein 305