PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun001711

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 347aa MW: 37873.4 Da PI: 10.1747

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45863264	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-14229	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	4.1e-31	270	327	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C++ gCp++k+ver+ +dp ++++tYegeH+h Vun001711 270 DEYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERAPDDPAMLIVTYEGEHRHA 327 9**********************9888**************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.2E-17	222	266	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.8E-32	256	327	IPR003657	WRKY domain
PROSITE profile	PS50811	30.928	263	329	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-26	266	328	IPR003657	WRKY domain
SMART	SM00774	5.1E-37	268	328	IPR003657	WRKY domain
Pfam	PF03106	1.3E-26	270	326	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
VISLSNFPIP NLFLHHQMAV ELMGFPKIDD QKAIQEAASE GLKGMEHLIR ILSHQPSHLN 60 TDLTDVTVSK FKKLISLLNR TGHARFRRAP VQPQVQPPEP VQTPEPIQTL APAHNPPSAP 120 LHLPPPQTAN LSLPALFASP APVHHASGSV TLDFTKPHNA LRNSKAKSVE LEFSKETFSV 180 SSNSSFMSSA ITGDGSVSNG KIFLAPPPPP PATAAGKPPT FKKRCLEHRE HSDDVSGSGK 240 CHCVKRRKNR VKKTVRVPAI SSKIADIPPD EYSWRKYGQK PIKGSPYPRG YYKCSTVRGC 300 PARKHVERAP DDPAMLIVTY EGEHRHAVQA AMQENAAGVV GLVFEST

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

VISLSNFPIP NLFLHHQMAV ELMGFPKIDD QKAIQEAASE GLKGMEHLIR ILSHQPSHLN  60
TDLTDVTVSK FKKLISLLNR TGHARFRRAP VQPQVQPPEP VQTPEPIQTL APAHNPPSAP  120
LHLPPPQTAN LSLPALFASP APVHHASGSV TLDFTKPHNA LRNSKAKSVE LEFSKETFSV  180
SSNSSFMSSA ITGDGSVSNG KIFLAPPPPP PATAAGKPPT FKKRCLEHRE HSDDVSGSGK  240
CHCVKRRKNR VKKTVRVPAI SSKIADIPPD EYSWRKYGQK PIKGSPYPRG YYKCSTVRGC  300
PARKHVERAP DDPAMLIVTY EGEHRHAVQA AMQENAAGVV GLVFEST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	256	328	2	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Regulates rhizobacterium B.cereus AR156-induced systemic resistance (ISR) to P.syringae pv. tomato DC3000, probably by activating the jasmonic acid (JA)- signaling pathway (PubMed:26433201). {ECO:0000250, ECO:0000269\|PubMed:26433201}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly during leaf senescence (PubMed:11722756). Repressed by rhizobacterium B.cereus AR156 in leaves, and to a lower extent, by P.fluorescens WCS417r (PubMed:26433201). {ECO:0000269\|PubMed:11722756, ECO:0000269\|PubMed:26433201}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027938488.1	0.0	probable WRKY transcription factor 11
Swissprot	Q9SV15	1e-136	WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBL	A0A4D6MIV0	0.0	A0A4D6MIV0_VIGUN; WRKY transcription factor 22
STRING	XP_007161326.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31550.1	1e-104	WRKY DNA-binding protein 11

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Jiang CH, et al. Transcription factors WRKY70 and WRKY11 served as regulators in rhizobacterium Bacillus cereus AR156-induced systemic resistance to Pseudomonas syringae pv. tomato DC3000 in Arabidopsis. J. Exp. Bot., 2016. 67(1): p. 157-74 [PMID:26433201] Ali MA, et al. Transcription factors WRKY11 and WRKY17 are involved in abiotic stress responses in Arabidopsis. J. Plant Physiol., 2018. 226: p. 12-21 [PMID:29689430]