PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vun001689
Organism
Vigna unguiculata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TALE
Protein Properties Length: 349aa    MW: 38761.2 Da    PI: 8.9813
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Vun#S45803329PU_unrefUnigeneView CDS
PUT-167a-Vigna_unguiculata-16192PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.84.2e-091662031954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+ +++  LAk++gL  +qV++WF N R +
  Vun001689 166 FEHflHPYPKDSDKVMLAKQTGLARSQVSNWFINARVR 203
                664459******************************88 PP
2BELL122.81.4e-3930101172
       BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                +rqelq+kk+kL+++l+eV++rY+qy++q+q+v+ssFe++ag+g+ak+Yt+lAl++iS++FrcLkdai+ qi
  Vun001689  30 QRQELQMKKSKLVNMLDEVEQRYRQYHHQMQIVVSSFEQAAGYGAAKSYTALALRTISKQFRCLKDAISAQI 101
                69********************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.4E-38199IPR006563POX domain
PfamPF075264.9E-391398IPR006563POX domain
PROSITE profilePS5007111.726144207IPR001356Homeobox domain
CDDcd000864.38E-10147207No hitNo description
SMARTSM003891.3E-8147211IPR001356Homeobox domain
SuperFamilySSF466896.84E-17148215IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-28150214IPR009057Homeodomain-like
PfamPF059207.3E-18164203IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
XNSGAGGGDG SSGGGENSAG KQVVELSTAQ RQELQMKKSK LVNMLDEVEQ RYRQYHHQMQ  60
IVVSSFEQAA GYGAAKSYTA LALRTISKQF RCLKDAISAQ IKATSKTLGE DDCLGVKVEG  120
SRLRYVDHHL RQQRALQQLG MIQPNAWRPQ RGLPERAVSI LRAWLFEHFL HPYPKDSDKV  180
MLAKQTGLAR SQVSNWFINA RVRLWKPMVE EMYMEEMKDH EQANGSENTR SKELNKELGS  240
TANVAPESGA IKRDNLQPKQ DSFNNQNTSP NEISANSSMS PMGGSLQSHS GFHLAGSSEV  300
HTSPNKPRSS EMQNSPSSIL SVDMEMKHNI GEHANTREAI ESTTKMDTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16153211563Homeobox protein Meis2
3k2a_B2e-16153211563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027928120.10.0BEL1-like homeodomain protein 1
RefseqXP_027928121.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-104BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A4D6NC680.0A0A4D6NC68_VIGUN; Pre-B-cell leukemia transcription factor
STRINGXP_007150021.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.32e-98BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]