PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vun000888

Organism

Vigna unguiculata

Taxonomic ID

3917

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TALE

Protein Properties

Length: 438aa MW: 48841.7 Da PI: 8.9433

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Vun#S45833024	PU_unref	Unigene	View CDS
PUT-167a-Vigna_unguiculata-24820	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.1	8e-10	146	183	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Vun000888 146 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 183 664459******************************88 PP
2	BELL	121	5.2e-39	10	81	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+ +l+eV++rY+qy++q+++v+ssFe++ag+gsa+ Yt+lAl++iS++FrcLkdaia+q+ Vun000888 10 ERQEIQMKKAKLIAMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQV 81 79*******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.8E-24	1	79	IPR006563	POX domain
Pfam	PF07526	4.8E-36	3	78	IPR006563	POX domain
PROSITE profile	PS50071	12.195	124	187	IPR001356	Homeobox domain
CDD	cd00086	2.96E-11	127	188	No hit	No description
SMART	SM00389	5.3E-9	127	191	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.76E-17	128	194	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-29	130	193	IPR009057	Homeodomain-like
Pfam	PF05920	1.6E-18	144	183	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence Send to blast
ERSSELSTAE RQEIQMKKAK LIAMLDEVEQ RYRQYHQQME IVVSSFEQAA GIGSARTYTA 60 LALQTISKQF RCLKDAIAGQ VRAANKSLGE EDCFGGKIEG SRLKYVDHHL RQQRALQQLG 120 MIQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR SQVSNWFINA 180 RVRLWKPMVE EMYLEEMKDH EQNGSEDKSS KSNEDSSTKM AAPPEKGPSG ETEAKSFNSK 240 QEVSKSQNTG MVSISRASTS PLGGSVRNQS GFSFMGSSEL EGITQGSPKK ARNHEMMHSP 300 NSVPSMNIDV KPNEANNEQL SMKFGEERQG RNESSFMGNQ TNFIGGFGQY PIGDIGRFDA 360 EQFAPRFSGN GVSLTLGLDS LPGTHQTFLP KQNIQLGRSL NIGEPNEFGS INTSSPHSSA 420 AYESISMQNP KRFAAQLL

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence Send to blast

ERSSELSTAE RQEIQMKKAK LIAMLDEVEQ RYRQYHQQME IVVSSFEQAA GIGSARTYTA  60
LALQTISKQF RCLKDAIAGQ VRAANKSLGE EDCFGGKIEG SRLKYVDHHL RQQRALQQLG  120
MIQHNAWRPQ RGLPERSVSV LRAWLFEHFL HPYPKDSDKH MLAKQTGLTR SQVSNWFINA  180
RVRLWKPMVE EMYLEEMKDH EQNGSEDKSS KSNEDSSTKM AAPPEKGPSG ETEAKSFNSK  240
QEVSKSQNTG MVSISRASTS PLGGSVRNQS GFSFMGSSEL EGITQGSPKK ARNHEMMHSP  300
NSVPSMNIDV KPNEANNEQL SMKFGEERQG RNESSFMGNQ TNFIGGFGQY PIGDIGRFDA  360
EQFAPRFSGN GVSLTLGLDS LPGTHQTFLP KQNIQLGRSL NIGEPNEFGS INTSSPHSSA  420
AYESISMQNP KRFAAQLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	133	191	5	63	Homeobox protein Meis2
3k2a_B	2e-16	133	191	5	63	Homeobox protein Meis2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027923115.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_027923120.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-140	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A4D6MCM2	0.0	A0A4D6MCM2_VIGUN; Pre-B-cell leukemia transcription factor
STRING	XP_007162972.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-129	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]