PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g10760.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 379aa    MW: 43122.3 Da    PI: 4.6824
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g10760.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.9e-19137190356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k++++t+eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k
  Vradi11g10760.1 137 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 190
                      56689***********************************************98 PP
2HD-ZIP_I/II130.56.4e-42137228293
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk + e+L +e+++L++e+++
  Vradi11g10760.1 137 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKGDYESLVEENDKLKAEVNS 228
                      9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.35E-19128194IPR009057Homeodomain-like
PROSITE profilePS5007117.378132192IPR001356Homeobox domain
SMARTSM003891.5E-17134196IPR001356Homeobox domain
CDDcd000862.14E-17135193No hitNo description
PfamPF000463.1E-16137190IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-19139199IPR009057Homeodomain-like
PRINTSPR000316.5E-6163172IPR000047Helix-turn-helix motif
PROSITE patternPS000270167190IPR017970Homeobox, conserved site
PRINTSPR000316.5E-6172188IPR000047Helix-turn-helix motif
PfamPF021831.8E-17192233IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MLLQPCRFSS KTKDSLAPLK SLNLFGLTPL TLLPSKVISS FSIHLTLFML FSATSLPPQF  60
SQLFIAWIHV EVFEIGPRTQ QHRGFSGFHD FCTTTIADEL VCMDYDRSLK PLPFFQALEK  120
EENCDDDYEG CFHQPGKKRR LTSEQVQFLE RNFEVENKLE PERKVQLAKE LGLQPRQVAI  180
WFQNRRARFK TKQLEKDYGT LKASYDRLKG DYESLVEEND KLKAEVNSLE SKLILRDKEK  240
ENSDDKSSPD AVNSPHKEPM DLISNSTSEN GTKVSLPIMV TCKQEDANSA KSDVLDSDSP  300
HCTDGNHPSS FVEPADSSHA FEPDHSDFSQ DEEDNLSESL LTLPCLPKVE EACYDDPPQN  360
PCNFGFHVED QTFCFWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184192RRARFKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g10760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026050.0AF402605.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157405.10.0hypothetical protein PHAVU_002G067200g
TrEMBLA0A0L9VNR30.0A0A0L9VNR3_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T3400.0A0A0S3T340_PHAAN; Uncharacterized protein
STRINGXP_007157405.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-44homeobox 1