PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g06240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | NAC | ||||||||
Protein Properties | Length: 338aa MW: 38766.4 Da PI: 4.8318 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.9 | 2.8e-55 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+e+d+y++ePwdL+ ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+ Vradi11g06240.1 9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIREIDLYRIEPWDLQDrcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKA 101 69****************************.9***************953432234667*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 v++ k +l+g++ktLvfykgrap+g+k+dW+mheyrle Vradi11g06240.1 102 VYD-KAKLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 138 ***.999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-60 | 5 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.495 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-29 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:1990110 | Biological Process | callus formation | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MMESMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IREIDLYRIE PWDLQDRCRI 60 GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKAKLIG MRKTLVFYKG 120 RAPNGQKSDW IMHEYRLESD ENGPPQEEGW VVCRAFKKKT TGQTKTIEGW DSSYFFEEGS 180 GVSTVADPID LISRQSQSFL SQNFLCKQEI EADNLSCMLQ DPFVQLPQLE SPSLPLVKRP 240 STVSLVSDNN EDEDIQNRLS NNNTKKVTDW RALDKFVASQ LSQEDTLETN GLSSFEPHDS 300 HDMALLLLQS SRDEGNRLSP FLNTNSDCDI GICVFEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-51 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swm_B | 2e-51 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swm_C | 2e-51 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swm_D | 2e-51 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_A | 2e-51 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_B | 2e-51 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_C | 2e-51 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
3swp_D | 2e-51 | 9 | 163 | 20 | 173 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00266 | DAP | Transfer from AT2G18060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g06240.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520143.1 | 0.0 | NAC domain-containing protein 37 | ||||
Refseq | XP_014520144.1 | 0.0 | NAC domain-containing protein 37 | ||||
Swissprot | Q9SL41 | 1e-163 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A1S3VP26 | 0.0 | A0A1S3VP26_VIGRR; NAC domain-containing protein 37 | ||||
STRING | XP_007157940.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4565 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-154 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
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