PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g03840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 133aa MW: 15181.8 Da PI: 10.0561 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 39.8 | 7.7e-13 | 12 | 41 | 27 | 56 |
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 +++++ LA++l+L rqV vWFqNrRa+ k Vradi11g03840.1 12 EKMKQALARQLNLRPRQVEVWFQNRRARTK 41 57899***********************98 PP | |||||||
2 | HD-ZIP_I/II | 91.7 | 8.3e-30 | 13 | 76 | 27 | 91 |
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 + K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Vradi11g03840.1 13 KMKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELK-AL 76 6799*********************************************************9.55 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0039 | 3 | 47 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.93E-9 | 4 | 44 | No hit | No description |
Pfam | PF00046 | 2.7E-10 | 12 | 41 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-11 | 12 | 41 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-10 | 13 | 51 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.212 | 15 | 43 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 18 | 41 | IPR017970 | Homeobox, conserved site |
SMART | SM00340 | 1.1E-24 | 43 | 86 | IPR003106 | Leucine zipper, homeobox-associated |
Pfam | PF02183 | 2.6E-10 | 43 | 77 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MCGKKYKMNG YEKMKQALAR QLNLRPRQVE VWFQNRRART KLKQTEVDCE FLKKCCETLT 60 DENRRLKKEL QELKALKLAQ PLYMPMPAAT LTMCPSCERL GGVSDNASNK SPFSMAPKTH 120 FYNPFANPSA AC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 43 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g03840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-156 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014519906.1 | 3e-83 | homeobox-leucine zipper protein HAT22 isoform X2 | ||||
Refseq | XP_017426533.1 | 3e-83 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 2e-63 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A0L9UQV6 | 6e-82 | A0A0L9UQV6_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3T5V1 | 6e-82 | A0A0S3T5V1_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1S3VNF0 | 8e-82 | A0A1S3VNF0_VIGRR; homeobox-leucine zipper protein HAT22 isoform X2 | ||||
STRING | GLYMA11G04840.1 | 9e-81 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1144 | 33 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 4e-55 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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