PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi11g02420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 23569.3 Da PI: 4.7439 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 3.9e-19 | 49 | 99 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +++Wv+e r+p++ + r++lg++ t+e+Aa+a++ a+++l+g Vradi11g02420.1 49 PVYRGVRRRN-NNKWVCEMRVPNN---NSRIWLGTYPTPEMAARAHDVAALALRG 99 68*****887.8*********944...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.5E-14 | 49 | 99 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.456 | 50 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-30 | 50 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-21 | 50 | 109 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-27 | 50 | 113 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-7 | 51 | 62 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.20E-29 | 51 | 109 | No hit | No description |
PRINTS | PR00367 | 2.0E-7 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MEHDSEASCE TGSPTTVQSS GYSDEEVILA SSRPKKRAGR RVFKETRHPV YRGVRRRNNN 60 KWVCEMRVPN NNSRIWLGTY PTPEMAARAH DVAALALRGK SACLNFADSV WRLAVPDSTD 120 AEEIRRAAVE AAEAFMGEDV SQQQRNEGIE EPPRLQQEEM SEVEELHDLL LRIANEPLMS 180 PPPCVRDGRE WNDVEIFDAE VSLWSFSI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00002 | PBM | Transfer from 475045 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi11g02420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014520325.1 | 1e-153 | dehydration-responsive element-binding protein 1E | ||||
Swissprot | Q9SGJ6 | 7e-62 | DRE1E_ARATH; Dehydration-responsive element-binding protein 1E | ||||
TrEMBL | A0A1S3VPW2 | 1e-151 | A0A1S3VPW2_VIGRR; dehydration-responsive element-binding protein 1E | ||||
STRING | XP_007158456.1 | 1e-124 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63030.2 | 8e-47 | ERF family protein |