PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g11790.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GeBP
Protein Properties Length: 262aa    MW: 29032.2 Da    PI: 10.1502
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g11790.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573103.61.6e-3212111198
           DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                      k+fqrlwseeDe+++L+Gl df++ktg++p +    +af++f+kks++++v+++ql eK rrLKkK++    k +s +   fsk+hd+k+fels
  Vradi10g11790.1  12 KKFQRLWSEEDELAILKGLADFTTKTGQDPLKfaGGNAFHDFLKKSLHVEVTSNQLKEKARRLKKKYEIAAVKGNSADGLIFSKPHDKKTFELS 105
                      68**************************88765599********************************************************** PP

           DUF573  93 kkiWgs 98 
                      kk+Wgs
  Vradi10g11790.1 106 KKVWGS 111
                      ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-3014110IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEEGKKSGDQ MKKFQRLWSE EDELAILKGL ADFTTKTGQD PLKFAGGNAF HDFLKKSLHV  60
EVTSNQLKEK ARRLKKKYEI AAVKGNSADG LIFSKPHDKK TFELSKKVWG SEQDGGVANG  120
AVEKPKANGS AAKSPKKKET GSRNVASAKK AKPEPKQETV PATRTEFKES EKMHIDQKPV  180
NCEVSMFLHA VSHFKEGLGV CGLDEEGVKK GLELIGESKR TELRAKWKKL QRTELELFAN  240
RSELIGEQTK LIVEALQSSN H*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g11790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518534.10.0GLABROUS1 enhancer-binding protein-like
TrEMBLA0A1S3VKB60.0A0A1S3VKB6_VIGRR; GLABROUS1 enhancer-binding protein-like
STRINGXP_007148295.11e-157(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18313490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25210.11e-29DNA-binding storekeeper protein-related transcriptional regulator