PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT4G25210.1
Common NameF24A6.50
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GeBP
Protein Properties Length: 368aa    MW: 40274.4 Da    PI: 6.0995
Description DNA-binding storekeeper protein-related transcriptional regulator
Gene Model
Gene Model ID Type Source Coding Sequence
AT4G25210.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.23.4e-35139239198
       DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgkepsfskehdqkifelskk 94 
                  k+fqrl+se+Dei+lLqG+idf++++g +p++didaf+ +vkk i+f+++k+q+v+K++rLKkKf++ vk+     k++++++f+k+ +qk fels+k
  AT4G25210.1 139 KMFQRLFSETDEIALLQGIIDFTSTKG-DPYEDIDAFCIYVKKLIDFDATKNQIVTKLQRLKKKFNNAVKNslkkGKTEDDIEFAKDLEQKGFELSRK 235
                  58*************************.9**************************************99988877999******************** PP

       DUF573  95 iWgs 98 
                  iWgs
  AT4G25210.1 236 IWGS 239
                  **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.1E-27141238IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0016592Cellular Componentmediator complex
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025195anatomypollen tube cell
PO:0025281anatomypollen
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAPKKAEEVV ESPPVSSEEE ESGSSGEESE SSAEVPKKVE SSQKPESDSE GESESESSSG  60
PEPESEPAKT IKLKPVGTKP IPETSGSAAT VPESSTAKRP LKEAAPEAIK KQKTSDTEHV  120
KKPITNDEVK KISSEDAKKM FQRLFSETDE IALLQGIIDF TSTKGDPYED IDAFCIYVKK  180
LIDFDATKNQ IVTKLQRLKK KFNNAVKNSL KKGKTEDDIE FAKDLEQKGF ELSRKIWGSN  240
GVLVTGKSSR KKVGGTPAPK EMKLVAHSTP KKQQEEAKKP ERTEAKVVNT GLSIGKEIAS  300
FLNADNGSSC GLDESTLTAV WAKVADGAEK REVEEKWKKL KAKQFELCLQ RSGLVNETAK  360
MIFKAYES
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.25770.0bud| flower| inflorescence| root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO425671390.0
Genevisible254058_at0.0
Expression AtlasAT4G25210-
AtGenExpressAT4G25210-
ATTED-IIAT4G25210-
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds promoters containing the CryR2 element, 5'-ACATAWCT-3' (PubMed:25877331). The DNA-binding activity is decreased upon direct physical interaction with the mediator subunits and is modulated by redox conditions (PubMed:25877331). The oxidized protein is the preferential binding form (PubMed:25877331). {ECO:0000269|PubMed:25877331}.
Function -- GeneRIF ? help Back to Top
  1. Data suggest that presence of mediator complex subunits MED10a, MED28, and MED32 or changes in redox state affect DNA-binding capacity of GeBPL (GLABROUS1/GL1 enhancer-binding protein-like). [GeBPL] [GLABROUS1/GL1 enhancer-binding protein-like]
    [PMID: 25877331]
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT4G25210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q9SB42
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT4G25210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3250950.0AF325095.1 Arabidopsis thaliana putative protein (F24A6.50) mRNA, complete cds.
GenBankAL0353960.0AL035396.1 Arabidopsis thaliana DNA chromosome 4, BAC clone F24A6 (ESSAII project).
GenBankAL1615620.0AL161562.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 62.
GenBankAL1615630.0AL161563.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 63.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_194251.10.0DNA-binding storekeeper protein-related transcriptional regulator
SwissprotQ9SB420.0STKLS_ARATH; GLABROUS1 enhancer-binding protein-like
TrEMBLA0A178V1T90.0A0A178V1T9_ARATH; Uncharacterized protein
STRINGAT4G25210.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92721735
Publications ? help Back to Top
  1. Curaba J,Herzog M,Vachon G
    GeBP, the first member of a new gene family in Arabidopsis, encodes a nuclear protein with DNA-binding activity and is regulated by KNAT1.
    Plant J., 2003. 33(2): p. 305-17
    [PMID:12535344]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Kleffmann T, et al.
    The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions.
    Curr. Biol., 2004. 14(5): p. 354-62
    [PMID:15028209]
  4. Pendle AF, et al.
    Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions.
    Mol. Biol. Cell, 2005. 16(1): p. 260-9
    [PMID:15496452]
  5. Hall AE,Kettler GC,Preuss D
    Dynamic evolution at pericentromeres.
    Genome Res., 2006. 16(3): p. 355-64
    [PMID:16461884]
  6. B
    Purification of a plant mediator from Arabidopsis thaliana identifies PFT1 as the Med25 subunit.
    Mol. Cell, 2007. 26(5): p. 717-29
    [PMID:17560376]
  7. Wang Y, et al.
    Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.
    Plant Physiol., 2008. 148(3): p. 1201-11
    [PMID:18775970]
  8. Ito J, et al.
    Analysis of the Arabidopsis cytosolic proteome highlights subcellular partitioning of central plant metabolism.
    J. Proteome Res., 2011. 10(4): p. 1571-82
    [PMID:21166475]
  9. Waidmann S,Kusenda B,Mayerhofer J,Mechtler K,Jonak C
    A DEK domain-containing protein modulates chromatin structure and function in Arabidopsis.
    Plant Cell, 2014. 26(11): p. 4328-44
    [PMID:25387881]
  10. Shaikhali J, et al.
    Biochemical and redox characterization of the mediator complex and its associated transcription factor GeBPL, a GLABROUS1 enhancer binding protein.
    Biochem. J., 2015. 468(3): p. 385-400
    [PMID:25877331]