PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g09840.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HSF
Protein Properties Length: 338aa    MW: 38210.3 Da    PI: 4.4621
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g09840.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind79.26.7e-25151272100
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT...............XTTSEE CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks...............kekiwe 80 
                      Fl+k+y++++d+++++++sws +++sfvv+++ ef++++Lp++Fkhsnf+SF+RQLn+Y  ++ +++ k++ +               +e+ w+
  Vradi10g09840.1  15 FLSKTYDMVDDPSTNSIVSWSVTNKSFVVWNPPEFSRDLLPRFFKHSNFSSFIRQLNTYMTESERQSFKDEIKklkdekdqvlrelerHEQEWK 108
                      9********************999***********************************99888888877666677666666555533233333 PP

                      EEESXXXXXXXXXXXXXXXX CS
     HSF_DNA-bind  81 FkhksFkkgkkellekikrk 100
                        + +++ + ++ le++++k
  Vradi10g09840.1 109 MYEVQLQYS-NDRLEQLEKK 127
                      333333322.2334444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-27492IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.0E-3111115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.14E-221373IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-2115107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-141538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-145365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.9E-146678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMEEAQGNSS SLPPFLSKTY DMVDDPSTNS IVSWSVTNKS FVVWNPPEFS RDLLPRFFKH  60
SNFSSFIRQL NTYMTESERQ SFKDEIKKLK DEKDQVLREL ERHEQEWKMY EVQLQYSNDR  120
LEQLEKKQEN LVSSVSEVLQ KPGIALNLLP LTEKGDRKRR LPRSGIFSDD AGIDDHMETS  180
SVLPGVNAEG ASIFAPNMER FDLLESSIMF WENIAHDVQS HVNMDFDETT SCADSPAISS  240
VQLEVEVQPK SPGTNVNSES AVAAVSDLDA SKEPPVGTVS VAAGVNDIFW ERFLTENPGS  300
ENQEVHSERK DSDGRSNAKF WWNIRNVNNP PEQMGHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-1510732487Heat shock factor protein 1
5d5v_B3e-1510732487Heat shock factor protein 1
5d5v_D3e-1510732487Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160DRKRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g09840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022642491.10.0heat stress transcription factor A-4a
TrEMBLA0A3Q0FFP00.0A0A3Q0FFP0_VIGRR; heat stress transcription factor A-4a
STRINGXP_007147994.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-67heat shock transcription factor A4A