PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g09050.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 538aa    MW: 56536.4 Da    PI: 8.3959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g09050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.1e-114974227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                     +++ C +++rtG+C +G+rC+++H++
  Vradi10g09050.1 49 DEADCTYYLRTGFCGFGSRCRYNHPR 74
                     6799********************96 PP
2zf-CCCH35.22.1e-1195119327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++++rt tCk+G++Ck++H++
  Vradi10g09050.1  95 QPVCQYYMRTRTCKFGSSCKYHHPR 119
                      689********************96 PP
3zf-CCCH36.11.1e-11140164226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C+++ +tG+Ck+G++CkF+H+
  Vradi10g09050.1 140 GEKECSYYVKTGQCKFGATCKFHHP 164
                      7899********************9 PP
4zf-CCCH31.62.7e-10407429426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C ++a+ G Ck+G+ CkF H+
  Vradi10g09050.1 407 SPCTHYAQHGVCKFGSACKFDHS 429
                      69********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5964775IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-44774IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-64975IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-84974IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-45374IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.45592120IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-492119IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-995119IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-595119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-497117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.718138166IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6138165IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9140164IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6140165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4144163IPR000571Zinc finger, CCCH-type
SMARTSM003560.0041403430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737404431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5406433IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-8407429IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5408430IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MEQYGRSSEG SRSDPSPEWA GPGAQTGLEE PMWQLGLGAA EESYPQRPDE ADCTYYLRTG  60
FCGFGSRCRY NHPRDRGMVV GAERAAGEYP ERVGQPVCQY YMRTRTCKFG SSCKYHHPRL  120
AGGAVTPVSL NYYGYPLRPG EKECSYYVKT GQCKFGATCK FHHPVPAGVQ IPAPSPVAPV  180
SPLPVPVPSP IYSTMQPPPG PSSQQIGVLV ARPPLLPGSL VQSPYGPVVL SPAMVPISGW  240
GPYQASGTGA VLPSGTPNVG SAQLYGMTQL PSSAAAYPGP YQLPGSLVGP SSSNQKEQAF  300
PERSNQQDYQ YYPKTGEVKG GPSYRHHPPP EMTAPKANVT LSPGGLPLRP FSEISIPHRG  360
EDGARVGKFV NGCIGTKTEV CGRIKLGINQ PLSPYIFSSS QHHQGASPCT HYAQHGVCKF  420
GSACKFDHSV GSLSYSPSAS SLADMPVAPY PVGSTIGTLA PSSSSSELRL ELYSGSNKES  480
VPSRMSSSSG MLTGSIGLTL STGGPISQSN SQPSAPSLDP LATVTSATSS NVSHTSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g09050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022643038.10.0zinc finger CCCH domain-containing protein 34 isoform X1
TrEMBLA0A3Q0FH240.0A0A3Q0FH24_VIGRR; zinc finger CCCH domain-containing protein 34 isoform X1
STRINGGLYMA15G10230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.11e-128C3H family protein