PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g07270.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 283aa    MW: 32008.8 Da    PI: 8.2219
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g07270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.73.7e-29171255186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW++ ev+ Li++r+++e+++r   +k+  Wee+s++m + g++rs+k+Ckekwen+nk+yk++  + kkr   +s++cpyfd+l+
  Vradi10g07270.1 171 RWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKR-RLNSKSCPYFDELD 255
                      8****************************************************************999997.89999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.677164228IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.3E-4164227IPR009057Homeodomain-like
PfamPF138373.4E-21170255No hitNo description
CDDcd122035.32E-28170234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
SFYLPTNNHS PSLFTSSQNP RAAIFFPFFF FYHYMDLFAA DHFPVPDHVA PFPDSGDLLF  60
PADLLSYRHN PQKLRPIRPL PSALNAHPRP PDPIASGSGH APSQESDSAL DAEDEEENDD  120
NSSASPEGNG PRKRRRKTVR KLEGFVKNLV TKGEVEVNAH KEFNSDPSKS RWPDVEVQSL  180
ITVRTSLEHK FRFMGSKGSI WEEISEAMYA LGYNRSAKKC KEKWENINKY YKRTIGSGKK  240
RRLNSKSCPY FDELDILYRN GLLSIGNALS NTTDAPQIEQ KE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131135RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g07270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_007147613.16e-83(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-33Trihelix family protein