PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi10g06520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 147aa MW: 17240.5 Da PI: 11.3206 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.9 | 1.4e-14 | 100 | 146 | 3 | 53 |
AP2 3 ykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkl 53 y+ Vr+++ +g+WvAe ++ ++ r+r +lg f+tae+Aa a+++ + kl Vradi10g06520.1 100 YRRVRQRP-WGKWVAE---FCLpRN-RTRLWLGVFDTAEDAAMAYDREAFKL 146 999*****.*******...766655.7*******************988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.47E-21 | 98 | 146 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-14 | 99 | 146 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.5E-13 | 99 | 146 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-20 | 99 | 146 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.688 | 99 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 100 | 111 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.1E-9 | 100 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.1E-10 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MQFRHQFGAT NSPFPHPSFQ NPQQIISFSS QQQNLSFPPN MVRDSSLPYH HHHQQHPQQL 60 LQHWRDALNL SPRGMFTHLG PDGRPLFRAP TQPINTTKLY RRVRQRPWGK WVAEFCLPRN 120 RTRLWLGVFD TAEDAAMAYD REAFKL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 98 | 146 | 4 | 53 | ATERF1 |
3gcc_A | 1e-14 | 98 | 146 | 4 | 53 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi10g06520.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014491721.1 | 6e-78 | ethylene-responsive transcription factor ERF053 | ||||
Swissprot | Q9SKT1 | 4e-30 | ERF53_ARATH; Ethylene-responsive transcription factor ERF053 | ||||
TrEMBL | A0A1S3TD86 | 1e-76 | A0A1S3TD86_VIGRR; ethylene-responsive transcription factor ERF053 | ||||
STRING | XP_007149866.1 | 4e-68 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4268 | 32 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20880.1 | 3e-31 | ERF family protein |
Publications ? help Back to Top | |||
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