PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g04470.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

MYB_related

Protein Properties

Length: 403aa MW: 45086 Da PI: 9.1138

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g04470.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.4	1.2e-16	117	161	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT eE++++++a k++G W++I +++g ++t+ q++s+ qk+ Vradi10g04470.1 117 RERWTDEEHKKFLEALKLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 161 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.42E-16	111	164	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.174	112	166	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.5E-9	114	164	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-15	115	164	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-13	116	164	IPR001005	SANT/Myb domain
Pfam	PF00249	6.7E-14	117	160	IPR001005	SANT/Myb domain
CDD	cd00167	1.88E-9	119	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MERVLFCFVI LRCELVVGEV KNQGSVWKQY PTVKSWKFAT AKRSRRSRSV IWFLKLWRFE 60 YDQNGFNRSQ DDPSVGSGVS LSSGVHSAPH IQLNEQFSCG SDYALKVRKP YTITKQRERW 120 TDEEHKKFLE ALKLHGRAWR RIEEHVGTKT AVQIRSHAQK FFSKVLRDPT GNVTNRAESI 180 EIPPPRPKRK PMHPYPRKLV ETPNKESSSI PEQLMKSASL KSSDFDQENQ SPKSVLSGAG 240 SDILSSSDSD TPNESLSPMS SISDIHTTSE EAGINADSSH DEKSLMKLKL PTKESEECSG 300 QTLKLFGITV FVTDTCKPSS PTTEACKPIP VNICKRDGRL ELIGHISPSE TSGISLLKVR 360 EGPETCGGKG FVPYRRCMAG RENQSSSVTN DTREEQCIHL SL*

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MERVLFCFVI LRCELVVGEV KNQGSVWKQY PTVKSWKFAT AKRSRRSRSV IWFLKLWRFE  60
YDQNGFNRSQ DDPSVGSGVS LSSGVHSAPH IQLNEQFSCG SDYALKVRKP YTITKQRERW  120
TDEEHKKFLE ALKLHGRAWR RIEEHVGTKT AVQIRSHAQK FFSKVLRDPT GNVTNRAESI  180
EIPPPRPKRK PMHPYPRKLV ETPNKESSSI PEQLMKSASL KSSDFDQENQ SPKSVLSGAG  240
SDILSSSDSD TPNESLSPMS SISDIHTTSE EAGINADSSH DEKSLMKLKL PTKESEECSG  300
QTLKLFGITV FVTDTCKPSS PTTEACKPIP VNICKRDGRL ELIGHISPSE TSGISLLKVR  360
EGPETCGGKG FVPYRRCMAG RENQSSSVTN DTREEQCIHL SL*

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g04470.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031199	0.0	KT031199.1 Glycine max clone HN_CCL_153 MYB/HD-like transcription factor (Glyma11g33180.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014517128.1	0.0	protein REVEILLE 2
Refseq	XP_014517129.1	0.0	protein REVEILLE 2
Refseq	XP_022642711.1	0.0	protein REVEILLE 2
Swissprot	F4KGY6	1e-59	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A1S3VG86	0.0	A0A1S3VG86_VIGRR; protein REVEILLE 2
STRING	XP_007146984.1	1e-176	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2956	33	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	5e-56	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]