PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g03950.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 267aa    MW: 29603.1 Da    PI: 6.9562
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g03950.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.99.3e-22117167155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+++GVr+++ +grW AeIrdp++   rkr++lg+f+taeeAa+ +++a+ +l+g
  Vradi10g03950.1 117 SKFRGVRQRP-WGRWTAEIRDPTQ---RKRVWLGTFDTAEEAAAVYDEAAVNLKG 167
                      79********.**********965...5**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.1E-6912266IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000181.84E-33117175No hitNo description
SuperFamilySSF541712.68E-22117176IPR016177DNA-binding domain
PfamPF008479.5E-14117167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-30118176IPR001471AP2/ERF domain
PROSITE profilePS5103223.749118175IPR001471AP2/ERF domain
SMARTSM003801.1E-36118181IPR001471AP2/ERF domain
PRINTSPR003671.3E-10119130IPR001471AP2/ERF domain
PRINTSPR003671.3E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MSLQPTMNLS HPFNPPTSSS NFYTHPPCKP SKNPQPPHKK LLRVILTDHD ATDSESSGDD  60
EGPKNPSKHK KVKREITHIT INLPFIPEPP MVTPSFSTHP TPLTRPEKRP AAPRRRSKFR  120
GVRQRPWGRW TAEIRDPTQR KRVWLGTFDT AEEAAAVYDE AAVNLKGPDA VTNFPLAATG  180
KRELHVSPPE AACSGDGFSS PTSVLTYCDG DSSPFGGFRY GEVDAFGFDI DAPFSLTDVN  240
MGVLNQRYAK EEFGEFDPDE FLTWPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-191171751372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g03950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014518694.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_014518695.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_022642367.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_022642368.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_022642369.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_022642370.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_022642371.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_022642372.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_022642373.10.0pathogenesis-related genes transcriptional activator PTI6
SwissprotO046821e-47PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A1S3VKS70.0A0A1S3VKS7_VIGRR; pathogenesis-related genes transcriptional activator PTI6
STRINGXP_007146901.11e-130(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-27cytokinin response factor 4