PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi10g01970.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 405aa    MW: 45286.1 Da    PI: 6.2031
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi10g01970.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.7e-14246291454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N++f  Lr+ +P+       K++Ka+ L  Av+YI++L
  Vradi10g01970.1 246 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 291
                      799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-3123176IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.29E-14240292No hitNo description
PROSITE profilePS5088817.352242291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.68E-18244313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-17246303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11246291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MKGKIREFID SASSSVVSNT NALQQRLQFI LQNCHERWVY AIFWQATKDS DSRLTLEYGD  60
GLFMGGKGRE GTEVRMSEEQ TRNHVNDIEW FYRVSQTRSY AAGDGVVGCA FGSGVDVWLS  120
GVKQFEVNEC DERVGEARRH GIQTLVCVSV ARGILELGSD EVLKLDYGVL QMVKSVMEER  180
QSGSENPVSK QWVVPGKEEE RERRRELEGS STDSSGPSDH DAEGNNNNVP MMGRRAGRVR  240
EPLPVNHVEA ERQRREKLNQ RFYALRSAVP NVSKMDKASL LSDAVDYINE LKVKIGSLQA  300
AFQAKQEAPA EQVQPQHIPA PSSATTDMRV EVQILGSEAM IRVQSLNVNH PSARLMDALR  360
DVNLQVLHAT ISNIKEMMLQ DVVVRVPHDL TTQEALQTAI MHRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-22191775192Transcription factor MYC3
4rqw_B1e-22191775192Transcription factor MYC3
4rs9_A1e-22191775192Transcription factor MYC3
4yz6_A1e-22191775192Transcription factor MYC3
5gnj_A1e-23244295657Transcription factor MYC2
5gnj_B1e-23244295657Transcription factor MYC2
5gnj_E1e-23244295657Transcription factor MYC2
5gnj_F1e-23244295657Transcription factor MYC2
5gnj_G1e-23244295657Transcription factor MYC2
5gnj_I1e-23244295657Transcription factor MYC2
5gnj_M1e-23244295657Transcription factor MYC2
5gnj_N1e-23244295657Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi10g01970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014517245.10.0transcription factor MYC2-like
TrEMBLA0A1S3VG400.0A0A1S3VG40_VIGRR; transcription factor MYC2-like
STRINGXP_007151965.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-59bHLH family protein