PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vradi10g00100.1

Organism

Vigna radiata

Taxonomic ID

157791

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

G2-like

Protein Properties

Length: 240aa MW: 26775.7 Da PI: 8.2744

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vradi10g00100.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	85.8	4.3e-27	82	132	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 prlrWtpeLHe Fve+ve LGG++kAtPk+il++m+vkgL ++h+kSHLQ Vradi10g00100.1 82 PRLRWTPELHEYFVEVVEGLGGKNKATPKSILQMMHVKGLRISHIKSHLQE 132 9*************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.2E-24	78	132	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.24E-13	80	132	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-20	81	132	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	83	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MVSEPDEQQY EKGYSWLGML PLEENASAGG RVYQCGRNSP LKWEIVRISS VLLLLLLHDV 60 KVKNMKNSKK TGVRKYQKSE NPRLRWTPEL HEYFVEVVEG LGGKNKATPK SILQMMHVKG 120 LRISHIKSHL QEMEGNEDGK DLLMCSNCSS QRSQETKFRA SKYDMGIVTQ EIRPSENKGL 180 SQTSETDYDL NQVLCCKCCK VVRQGGVVGD LVGGRGSVGG FVDEPGEGGI KVKQEHDML*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-16	83	132	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	83	132	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	83	132	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	83	132	3	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vradi10g00100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	6e-87	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014517177.1	1e-90	putative Myb family transcription factor At1g14600
TrEMBL	A0A1S3VG37	3e-89	A0A1S3VG37_VIGRR; putative Myb family transcription factor At1g14600
STRING	XP_007146259.1	1e-70	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9186	28	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	9e-23	G2-like family protein