PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g05610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 218aa MW: 24815.2 Da PI: 9.8448 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.9 | 5.1e-18 | 80 | 130 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+++AeIrdp+ ng +r++lg++ ++eeA a+++a+ k++g Vradi09g05610.1 80 RFRGVRRRP-WGKFAAEIRDPKRNG--ARIWLGTYESEEEAGLAYDKAAFKMRG 130 79*******.**********98776..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.90E-31 | 79 | 140 | No hit | No description |
Pfam | PF00847 | 6.7E-13 | 80 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-22 | 80 | 139 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.433 | 80 | 138 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-35 | 80 | 144 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-30 | 80 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 81 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-13 | 120 | 140 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MATTTTTTSS SSCDFSSLES IQHYLLELEP DCSNTLMSVY SHQVLHSSMY KPISEGVHDA 60 DNNNLLIEAR EGHAPPVWKR FRGVRRRPWG KFAAEIRDPK RNGARIWLGT YESEEEAGLA 120 YDKAAFKMRG SKAKLNFPHL IDSDVSLKPV RMMKGFKKNG FESYSSFSPP SETVKESKKR 180 KNLPQLLNRL AKNRRQLQVF QTCLYTNDVN VHHLCFN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-30 | 79 | 143 | 4 | 68 | ATERF1 |
3gcc_A | 6e-30 | 79 | 143 | 4 | 68 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g05610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014516181.1 | 1e-164 | ethylene-responsive transcription factor 1B | ||||
TrEMBL | A0A1S3VCU7 | 1e-163 | A0A1S3VCU7_VIGRR; ethylene-responsive transcription factor 1B | ||||
STRING | XP_007134479.1 | 4e-99 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF512 | 33 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 9e-36 | ethylene-responsive element binding factor 13 |