PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g05540.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 305aa    MW: 33738.6 Da    PI: 7.8677
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g05540.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-18142196256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++ keq  +Lee F+++++++ ++++ LAk+l+L+ r V vWFqNrRa+ k
  Vradi09g05540.1 142 RKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRXVEVWFQNRRARTK 196
                      66677889*********************************************98 PP
2HD-ZIP_I/II119.51.7e-38142231191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl keq+ +LEe+F+e+++L+p++K++la++L+l+pr v+vWFqnrRARtk+kq+E+d+e+Lk++y++l+e+n+rL+kev+eLr +l
  Vradi09g05540.1 142 RKKLRLLKEQALVLEETFKEHNTLNPKQKQALAKQLNLSPRXVEVWFQNRRARTKLKQTEVDCEYLKKCYENLTEDNRRLQKEVQELR-AL 231
                      69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.8E-271112IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.6E-17120199IPR009057Homeodomain-like
SuperFamilySSF466899.61E-18128199IPR009057Homeodomain-like
PROSITE profilePS5007116.86138198IPR001356Homeobox domain
SMARTSM003898.9E-15140202IPR001356Homeobox domain
PfamPF000461.4E-15142196IPR001356Homeobox domain
CDDcd000861.00E-14142199No hitNo description
PROSITE patternPS000270173196IPR017970Homeobox, conserved site
SMARTSM003409.4E-25198241IPR003106Leucine zipper, homeobox-associated
PfamPF021831.8E-11198232IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAEKDDGLGL GLSLRXGEND DNNRNEQHPF KMHKPPQPVP SQRASSFNSV FHFHGASHVT  60
NRSSEPPPFF FGIDVNLPPP PPSSVLPCYE ENGVSSPNSA VSSISGKRXE REENERGSCS  120
RGGSEDDDGG GCGGDADGDT SRKKLRLLKE QALVLEETFK EHNTLNPKQK QALAKQLNLS  180
PRXVEVWFQN RRARTKLKQT EVDCEYLKKC YENLTEDNRR LQKEVQELRA LKFSPQLYMH  240
MNPPTTLTMX PSCERVAVSS ASXSSAAMPS VPPPANHXPL SPTIRRPVPV NPWAAXSIQX  300
XPPP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146SRKKLRL
2190198RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g05540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-150AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014515436.20.0homeobox-leucine zipper protein HAT3, partial
SwissprotP466022e-84HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A1S3VAR10.0A0A1S3VAR1_VIGRR; homeobox-leucine zipper protein HAT3
STRINGXP_007134496.11e-155(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.16e-66homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]