PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g03480.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 361aa    MW: 40538.3 Da    PI: 4.6854
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g03480.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.17.7e-28129189259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dgy+WrKYGqK++ g++fpr+YYrCt++   gC ++k+v++s+edp + eitY g+H+++
  Vradi09g03480.1 129 EDGYSWRKYGQKDILGAKFPRGYYRCTYRniqGCLATKQVQKSDEDPMIYEITYIGRHTCT 189
                      7***************************98999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-27122190IPR003657WRKY domain
PROSITE profilePS5081121.597123186IPR003657WRKY domain
SuperFamilySSF1182907.72E-25127190IPR003657WRKY domain
SMARTSM007742.1E-39128190IPR003657WRKY domain
PfamPF031062.0E-26129188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEESAKCEQV SVIDELLLGK ELTKKLCEQL FSSSSSSSSS SSSSCDTNEV LIEKIISTME  60
KALAKVNCMA NVGESKAMMD SHCSFTNGSP KSEVMEPEVE HKHVSKKRKT MPRRREQVEV  120
CLGTEGNKED GYSWRKYGQK DILGAKFPRG YYRCTYRNIQ GCLATKQVQK SDEDPMIYEI  180
TYIGRHTCTQ ASHLKKTAVP PSKTKVRIEE NQHQTNEKNQ PQQEKIEQPP ETIFSFGSQG  240
EVKVEDLDLE IFPSFCFSSP SIGSENDENN NIFPYSMIDN NLLESFSPSF MSTTTSESDM  300
FCNWESTGLG QSVHNSTSDI TDIVSTPTSV TYSSIMDLDI FLDKNDFDID FPMNTRELCI  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-201301861874Disease resistance protein RRS1
5w3x_D9e-201301861874Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g03480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014516760.10.0probable WRKY transcription factor 53
TrEMBLA0A1S3VER70.0A0A1S3VER7_VIGRR; probable WRKY transcription factor 53
STRINGXP_007135232.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24110.15e-38WRKY DNA-binding protein 30