PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi09g02750.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 240aa    MW: 26126.7 Da    PI: 10.6592
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi09g02750.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.92e-1112772286
         trihelix 22 rrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                     ++g+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k+    +   s s++p+fd+l+
  Vradi09g02750.1 12 NKGNLKQKHWKEVADIVsgreDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAG---SISKWPFFDRLD 77
                     57899************854334444556679*****************99986...7889******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.5E-171279No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MMQSCGIVVL ENKGNLKQKH WKEVADIVSG REDYTKAPKT DIQCKNRIDT VKKKYKSEKA  60
KIAAGSISKW PFFDRLDKLI GPSAKIPGAG GSSGTAGTSA AGNSILQSHK VPLGIPVGVR  120
DGVNQYHRPQ RPAQQQPQPV PLKNQKIQFR RRGPPLESDS DERGASSPAS SDSFPPESFE  180
RKRPRVMSSN AGKGSEGRRR AKGWGSACIE VILISDRTLK FNTALTDYQT LSWANLGDI*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi09g02750.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017441369.11e-115PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG83e-38ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A0L9VQ081e-113A0A0L9VQ08_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SZD61e-113A0A0S3SZD6_PHAAN; Uncharacterized protein
STRINGXP_007135401.11e-98(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-29sequence-specific DNA binding transcription factors