PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi09g01430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 23064.7 Da PI: 4.8024 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.6e-18 | 40 | 90 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g Vradi09g01430.1 40 PVYHGVRKRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALTIKG 90 68*****887.**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.5E-13 | 40 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 41 | 98 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-33 | 41 | 104 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-21 | 41 | 98 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 41 | 99 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.28E-30 | 42 | 99 | No hit | No description |
PRINTS | PR00367 | 1.1E-9 | 42 | 53 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-9 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MTQTTTSSET TSSTSSSPSS HSGSKAHARA KRPRDCSRHP VYHGVRKRNW GKWVSEIREP 60 RKKSRIWLGT FATPEMAARA HDVAALTIKG QSAILNFPEI ADLLPRPLTC SPRDIQAAAT 120 AAASMSKFDP VTQTSDSETE TSEESELSEI VELPNIEDSF SFDSSVDSFV MVDVVDSWMF 180 PPLDSFCAAF SDELFPQQCC SETLLPIWD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 39 | 98 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi09g01430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 0.0 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022641904.1 | 1e-152 | dehydration-responsive element-binding protein 3 | ||||
Swissprot | Q9LYD3 | 9e-57 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A3Q0FGX7 | 1e-151 | A0A3Q0FGX7_VIGRR; dehydration-responsive element-binding protein 3 | ||||
STRING | GLYMA07G02001.1 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 5e-48 | ERF family protein |
Publications ? help Back to Top | |||
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