PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g21240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 222aa MW: 24882.9 Da PI: 4.7889 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 2.8e-10 | 8 | 32 | 20 | 46 |
TTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46 G + W++Ia++++ gRt++++k++w++ Vradi08g21240.1 8 GDR-WSKIAQHLP-GRTDNEIKNYWRT 32 555.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.786 | 1 | 38 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.12E-8 | 4 | 37 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.1E-8 | 8 | 32 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-12 | 8 | 33 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.73E-8 | 9 | 32 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MLLLLFIGDR WSKIAQHLPG RTDNEIKNYW RTRVQKQARQ LNIESGSKRF IDAVKCFWMP 60 RLLQKMEQNN SPSPHCSMTS MVNLGNSGEA SMSSTSSSFN IPSMLSSSPP QREFIMDGAN 120 HLGTMSNPIN PSPDSFPYSQ LLGISEHPKS PPNVLENNVY SYPNQDNCYA DTNNYGMEGL 180 NMDPLSAMGT YDFPQFDFQS AGNGWMLDSV EDTTLWNMDA M* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g21240.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 0.0 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512719.1 | 1e-158 | transcription factor MYB62 | ||||
Swissprot | Q9C9G7 | 4e-31 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A1S3V3J6 | 1e-157 | A0A1S3V3J6_VIGRR; transcription factor MYB62 | ||||
STRING | XP_007142925.1 | 1e-142 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1639 | 34 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 5e-33 | myb domain protein 62 |
Publications ? help Back to Top | |||
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