PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Vradi08g18480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 350aa MW: 39207.4 Da PI: 9.2368 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.3e-09 | 53 | 141 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT............................................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg............................................tWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + +Wk+I + +g +t q++s+ qky Vradi08g18480.1 53 RESWTEPEHDKFLEALQLYN-HfqyvesrdtldstdsmagfdcsvlhcsrlvererirrklgrfdrDWKKIEAFVG-SKTVIQIRSHAQKY 141 789****************8.56*****************************************************.*************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-5 | 51 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-5 | 52 | 144 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.23E-7 | 110 | 147 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-7 | 114 | 144 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.4E-5 | 120 | 147 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MVSRNSNPSE AFHMDPSAMS LPGILPFAAA TGADSLEDPA KKTRKPYTIT KSRESWTEPE 60 HDKFLEALQL YNHFQYVESR DTLDSTDSMA GFDCSVLHCS RLVERERIRR KLGRFDRDWK 120 KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT SEHLPPPRPK RKAAHPYPQK ASKNVPVLSQ 180 VSGGSLQSSS ALIEPGYIMK RDSSAMLKTP IIKAAASSWS NNSLQKSTNL LHGHKVNNCC 240 SNNESPRGQL VGESNGQGNN IHPLRILPDF GQVYSFIGSV FDPNVTGHLQ KLKRMDPIDV 300 ETVLLLMRNL SINLVSPDFE DHRRLLASYE VEPESDNYYI NADRNMLEG* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00625 | PBM | Transfer from PK02532.1 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Vradi08g18480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_014512388.1 | 0.0 | protein REVEILLE 6 isoform X1 | ||||
Swissprot | Q8H0W3 | 1e-109 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A1S3V221 | 0.0 | A0A1S3V221_VIGRR; protein REVEILLE 6 isoform X1 | ||||
STRING | XP_007143469.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1119 | 33 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G52660.1 | 8e-93 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|