PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g18140.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 368aa    MW: 41804.3 Da    PI: 9.9032
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g18140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix104.76.7e-33198283187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r+++e++++++  k+plWe++s+ m + g++rs+k+Ckekwen+nk++kk+ke++k r  e+s+tcpyf++l+a
  Vradi08g18140.1 198 RWPKAEVHALIRLRTSLETKYQENGPKAPLWEDISAGMLRLGYNRSAKRCKEKWENINKYFKKVKESNKHR-RENSKTCPYFHELDA 283
                      8********************************************************************87.78889********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.178191255IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.9E-4194254IPR009057Homeodomain-like
PfamPF138376.0E-23197284No hitNo description
CDDcd122032.82E-27197262No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MNNLFSTTST SSSTASDEDL EEKYRKKRKW KDYFRRLTRQ VLAKQEEMQK RFLEAIDKRE  60
REHVAQQEAW RIQEMARINR EHELLVQERS TAAAKNAAVI AFLQQLSGQN QNQNPSTQTG  120
ANFLQTPPSQ PPPPPQVSQV KPPPQPQIPL VMSNNNNIEI QKMNNGHSAV AATPTTAATA  180
ICVVATTPTS LNSLSSSRWP KAEVHALIRL RTSLETKYQE NGPKAPLWED ISAGMLRLGY  240
NRSAKRCKEK WENINKYFKK VKESNKHRRE NSKTCPYFHE LDALYKEKSK SQNPFGVSFL  300
NMKPHEMMEP LMVQPEQHLK ADHWSCGSHS GRHELGSELR SLATVHMGQQ STRSCSGCTC  360
FSALEYL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g18140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514238.10.0trihelix transcription factor GT-2-like
SwissprotQ391172e-79TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A1S3V7B60.0A0A1S3V7B6_VIGRR; trihelix transcription factor GT-2-like
STRINGXP_007143537.11e-173(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-50Trihelix family protein