PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Vradi08g18020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
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Family | MYB_related | ||||||||
Protein Properties | Length: 243aa MW: 26327.2 Da PI: 7.6293 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 171 | 219 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++ +G+g +W + ++++g++R++k+c++rw +yl Vradi08g18020.1 171 KGPWSPEEDAKLKAYIEHHGTGgNWIALPQKIGLKRCGKSCRLRWTNYL 219 79*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-22 | 162 | 229 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.2E-16 | 165 | 229 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.199 | 166 | 223 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-12 | 170 | 221 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 171 | 219 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.19E-10 | 173 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
DSPSSPTSYP AAARHFVSSP FRTSPAAGGH LCSSSFKPSP AHRASPFITS PAHRTPPSSN 60 PLETSLTRHS PPWSFAVHIA SCPLYANSMA YLPSLVARLA SQSALTETTR RNHENDNASD 120 FVVDGEDGGS GEAVLLVDHV NEVFIDRDGE REAGRADMGR APCCDKANVK KGPWSPEEDA 180 KLKAYIEHHG TGGNWIALPQ KIGLKRCGKS CRLRWTNYLR PNIKHGGFSE EYIQEARGEV 240 HE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Vradi08g18020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 3e-79 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. | |||
GenBank | BT097403 | 3e-79 | BT097403.1 Soybean clone JCVI-FLGm-16K1 unknown mRNA. |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49690.1 | 5e-49 | myb domain protein 84 |