PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g17830.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 358aa    MW: 37859.6 Da    PI: 6.4222
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g17830.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.11.5e-20151200255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Vradi08g17830.1 151 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 200
                      7********.**********7.....337*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.7E-33151209IPR001471AP2/ERF domain
PROSITE profilePS5103225.712151208IPR001471AP2/ERF domain
SMARTSM003804.6E-38151214IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22151209IPR016177DNA-binding domain
PfamPF008472.9E-14151200IPR001471AP2/ERF domain
PRINTSPR003678.7E-12152163IPR001471AP2/ERF domain
CDDcd000184.44E-15159210No hitNo description
PRINTSPR003678.7E-12174190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEASACTCR PAVERIINSI GSHLCITVAH QRPSASGSAS GQEDPEDPFT PRDVQVQGGT  60
VGSVPTHVLS PSSSAQTNTE WVPASGFPMA PRFMHAPSPG LSSSPGPPLL GSGSVGQKRA  120
REDDTTSAAS GGEGGSSQTA SQEESGERRR RYRGVRQRPW GKWAAEIRDP HKAARVWLGT  180
FDTAEAAARA YDEAALRFRG NRAKLNFPEN VTAVRPPHLP DFPATSLSGS VDVPAVTGYS  240
PTVMQGAPFQ SSPDLLRDYW GYSQLLRSTG EFHGLEQWFY DSQMAALQSS SSSLLPPPPS  300
YAPSSASFPL FSSQQMGVFR PPGQQHHGGG DSGSGSEFPP SSWSDTSSYP PPPPPPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-22152212667ATERF1
3gcc_A1e-22152212667ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146151ERRRRY
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g17830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014512914.10.0ethylene-responsive transcription factor ABR1 isoform X1
TrEMBLA0A1S3V4450.0A0A1S3V445_VIGRR; ethylene-responsive transcription factor ABR1 isoform X1
STRINGXP_007143561.11e-112(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-16ethylene response factor 110