PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g17550.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NAC
Protein Properties Length: 560aa    MW: 63011.2 Da    PI: 4.4563
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g17550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.26.4e-53201462128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                      +pGfrFhPtdeelv++yLk+k+ gk+l+l +vi+e+d+yk++P++Lp +  +k+++++w+fF++rd+ky++g r+nrat++gyWkatgkd++v+
  Vradi08g17550.1  20 MPGFRFHPTDEELVMYYLKRKICGKRLKL-NVIRETDVYKWDPEELPgQsILKTGDRQWFFFCHRDRKYPNGARSNRATRHGYWKATGKDRNVI 112
                      69***************************.99**************96446788999************************************* PP

              NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++++vg+kktLvfy grap+g++tdWvmhey++
  Vradi08g17550.1 113 C-NSRAVGVKKTLVFYIGRAPSGTRTDWVMHEYTM 146
                      *.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-6015169IPR003441NAC domain
PROSITE profilePS5100554.07519169IPR003441NAC domain
PfamPF023651.6E-2721145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070301Biological Processcellular response to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MGEASGDGSA DCFSQMMSSM PGFRFHPTDE ELVMYYLKRK ICGKRLKLNV IRETDVYKWD  60
PEELPGQSIL KTGDRQWFFF CHRDRKYPNG ARSNRATRHG YWKATGKDRN VICNSRAVGV  120
KKTLVFYIGR APSGTRTDWV MHEYTMDEEE LKRCQGVKDY YALYKVFKKS GPGPKNGEQY  180
GAPFNEQEWA ADDDIVDFNI NITDQEDPNV VPENGSSLHP LLDDEINDII REILDDELVL  240
DQQHVNGYLD FPQVVTEETQ STVVDQFSEV PMYSETTDPC CQYFDVQPSF DFNQPVTSHL  300
QVSEASEVSS ASNIQRKGLD LDKVGFLEIN DLIDNDPALA NVENPVEYPQ FEDGLSEFDL  360
YQDAEMFLRD LGPIIHEPDS RAYTNAIVSN NIESQSFQLQ SGREDANQTV GEFWMHGERN  420
TLIPSEEGFV DSFSLSSPGV VCESLSFPTE GNYNQSSTME DVSTSSFSSS LWAFVESIPT  480
TPASAAESAL VNRALNRMSS FSRVKIRHTN ITAGKDTATT KKAGRKGFSF LFFPILIALC  540
AFLWVFVGNL RSLGRCISP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-482114617140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13746KRKICGKRLK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00179DAPTransfer from AT1G34190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g17550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6573050.0KF657305.1 Glycine max NAC transcription factor (SNAC38) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514171.10.0NAC domain-containing protein 17
TrEMBLA0A1S3V7470.0A0A1S3V747_VIGRR; NAC domain-containing protein 17
STRINGXP_007143604.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61313451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.11e-113NAC domain containing protein 17