PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi08g16870.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 367aa    MW: 39065.3 Da    PI: 6.4972
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi08g16870.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.5e-17270303134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C +C  tkTp+WR gp g+ktLCnaCG+++++ +
  Vradi08g16870.1 270 CMHCEITKTPQWRAGPMGPKTLCNACGVRFKSGR 303
                      99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.253264300IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-15264314IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14268301IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577165.23E-14268327No hitNo description
CDDcd002023.52E-13269316No hitNo description
PROSITE patternPS003440270295IPR000679Zinc finger, GATA-type
PfamPF003206.1E-15270303IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVGPNFMDEI DCGSFFDHID DLLDFPVEEV EGGAPTLPSV AAAAAAGNCN SLASIWPAGA  60
DSFPGSDSVF SGNSASDLSA ELSVPMILMN VVIALQYEDI LQLEWLSNFV EDSFCGGSLT  120
MKKVEEPSCT TKEDSVHNQF HTSSPVSVLE SSSSCSVGKT VPAPPRSPEV YIPVPCGRAR  180
SKRPRPATFN PRPAMNLISP ASSFVGENIQ PNVISSKTSS DSENFAESQL VAKIPKQGCG  240
EAKKKKKVKV TVPAAGGDSN QNGLQAVRKC MHCEITKTPQ WRAGPMGPKT LCNACGVRFK  300
SGRLYPEYRP AASPTFCPSL HSNSHKKVLE MRCRGIEKSG FAMNNNAAAS PELIPNTNSS  360
LSLEYI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181185KRPRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi08g16870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514432.10.0GATA transcription factor 8
RefseqXP_022641165.10.0GATA transcription factor 8
TrEMBLA0A1S3V8A50.0A0A1S3V8A5_VIGRR; GATA transcription factor
STRINGXP_007143712.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.21e-39GATA family protein